Bio:
Thèse de doctorat en Ingénierie Microbienne et Enzymatique (2016; Toulouse, INSA)
Vers la maîtrise des communautés microbiennes lignocellulolytiques : impact de la source d’inoculum et du prétraitement du substrat sur le fonctionnement des communautés (directeurs de thèse Guillermina Hernandez-Raquet et de Michael O’Donohue)

I was Hired in 2017 at INRA Nancy as Research Engineer in bioinformatics and biostatistics

Productions
Falentin, H., Auer, L., Mariadassou, M., Pascal, G., Rué, O., Dugat-Bony, E., … & Le Boulch, M. (2019). Guide pratique à destination des biologistes, bioinformaticiens et statisticiens qui souhaitent s’ initier aux analyses métabarcoding.
Escudié, F., Auer, L., Bernard, M., Mariadassou, M., Cauquil, L., Vidal, K., … & Pascal, G. (2018). FROGS: find, rapidly, OTUs with galaxy solution. Bioinformatics, 34(8), 1287-1294.
Lazuka, A., Auer, L., O’Donohue, M., & Hernandez-Raquet, G. (2018). Anaerobic lignocellulolytic microbial consortium derived from termite gut: enrichment, lignocellulose degradation and community dynamics. Biotechnology for biofuels, 11(1), 1-14.
Gales, A., Chatellard, L., Abadie, M., Bonnafous, A., Auer, L., Carrère, H., … & Dumas, C. (2018). Screening of phytophagous and xylophagous insects guts microbiota abilities to degrade lignocellulose in bioreactor. Frontiers in microbiology, 9, 2222.
Auer, L., Lazuka, A., Sillam-Dussès, D., Miambi, E., O’Donohue, M., & Hernandez-Raquet, G. (2017). Uncovering the potential of termite gut microbiome for lignocellulose bioconversion in anaerobic batch bioreactors. Frontiers in microbiology, 8, 2623.
Abot, A., Arnal, G., Auer, L., Lazuka, A., Labourdette, D., Lamarre, S., … & Henrissat, B. (2016). CAZyChip: dynamic assessment of exploration of glycoside hydrolases in microbial ecosystems. BMC genomics, 17(1), 671.
Lavigne, M. P., Bertron, A., Botanch, C., Auer, L., Hernandez-Raquet, G., Cockx, A., … & Paul, E. (2016). Innovative approach to simulating the biodeterioration of industrial cementitious products in sewer environment. Part II: Validation on CAC and BFSC linings. Cement and Concrete Research, 79, 409-418.
Lavigne, M. P., Bertron, A., Auer, L., Hernandez-Raquet, G., Foussard, J. N., Escadeillas, G., … & Paul, E. (2015). An innovative approach to reproduce the biodeterioration of industrial cementitious products in a sewer environment. Part I: test design. Cement and Concrete Research, 73, 246-256.
Escudie, F., Auer, L., Bernard, M., Cauquil, L., Vidal, K., MAMAN, S., … & Pascal, G. (2015, July). Find Rapidly OTU with Galaxy Solution.
Auer, L., Cauquil, L., Chaillou, S., Delbes, C., Dugat-Bony, E., Falentin, H., … & Rifa, E. (2015). How to design an efficient and robust pipeline for 16S rRNA-gene sequence analysis to improve our understanding on microbial communities?.
Dumas, C., Chatellard, L., Gales, A., Lazuka, A., Auer, L., Raquet, G. H., … & O’Donohue, M. (2014, April). Exploring enzymatic behaviour in xylo-and phytophagous insects consortia. What could be learned from Nature?.
Lazuka, A., Auer, L., Bozonnet, S., Morgavi, D. P., O’Donohue, M., & Hernandez-Raquet, G. (2015). Efficient anaerobic transformation of raw wheat straw by a robust cow rumen-derived microbial consortium. Bioresource technology, 196, 241-249.