Publications 2021

– Barroso‐Bergada D, Pauvert C, Vallance J, Delière L, Bohan DA, Buée M, Vacher C. 2021. Microbial networks inferred from environmental DNA data for biomonitoring ecosystem change: strengths and pitfalls. Molecular Ecology Resources. DOI: 10.1111/1755-0998.13302
– Colin, Y., Turpault, MP., Fauchery, L., Buée, M., Uroz, S.(2021) Forest plant cover and mineral type determine the diversity and composition of mineral-colonizing fungal communities. European Journal of Soil Biology 105, 103334
– Fracchia, F., Mangeot-Peter, L., Jacquot, L., Martin, F., Veneault-Fourrey, C., Deveau, A. (2021) Colonization of naïve roots from Populus tremula x alba involves successive waves of fungi and bacteria with different trophic abilities. Appl Environ Microbiol. 87(6):e02541-20 . doi:10.1128/AEM.02541-20.
– Mieszkin, S., Richet, P., Bach, C., Lambrot, C., Augusto, L., Buée, M., & Uroz, S. (2021). Oak decaying wood harbors taxonomically and functionally different bacterial communities in sapwood and heartwood. Soil Biology and Biochemistry, 155, 108160.
– Picard, L., Paris, C., Dhalleine, T., Morin, E., Oger, P., Turpault, M. P., & Uroz, S. (2021). The mineral weathering ability of Collimonas pratensis PMB3 (1) involves a Malleobactin‐mediated iron acquisition system. Environmental Microbiology.
– Picard, L., Turpault, M. P., Oger, P. M., & Uroz, S. (2021). Identification of a novel type of glucose dehydrogenase involved in the mineral weathering ability of Collimonas pratensis strain PMB3 (1). FEMS Microbiology Ecology, 97(1), fiaa232.
– Thomas, F., Le Duff, N., Wu, T. D., Cébron, A., Uroz, S., Riera, P., … & Guerquin-Kern, J. L. (2021). Isotopic tracing reveals single-cell assimilation of a macroalgal polysaccharide by a few marine Flavobacteria and Gammaproteobacteria. The ISME Journal, 1-14.
– Veneault-Fourrey, C., Rep, M. (2021) Quantitative resistance linked to late effectors. New Phytologist. 231: 1301–1303 doi: 10.1111/nph.17292.
– Lebreton, A., Zeng, Q., Miyauchi, S., Kohler, A., Dai, Y. C., & Martin, F. M. (2021). Evolution of the Mode of Nutrition in Symbiotic and Saprotrophic Fungi in Forest Ecosystems. Annual Review of Ecology, Evolution, and Systematics, 52.
– Skrede, I., Murat, C., Hess, J., Maurice, S., Sønstebø, J. H., Kohler, A., … & Kauserud, H. (2021). Contrasting demographic histories revealed in two invasive populations of the dry rot fungus Serpula lacrymans. Molecular Ecology, 30(12), 2772-2789.
– Plett, K. L., Kohler, A., Lebel, T., Singan, V. R., Bauer, D., He, G., … & Anderson, I. C. (2021). Intra‐species genetic variability drives carbon metabolism and symbiotic host interactions in the ectomycorrhizal fungus Pisolithus microcarpus. Environmental Microbiology, 23(4), 2004-2020.
– Perrot, T., Schwartz, M., Deroy, A., Girardet, J. M., Kohler, A., Morel-Rouhier, M., … & Didierjean, C. (2021). Diversity of Omega Glutathione Transferases in mushroom-forming fungi revealed by phylogenetic, transcriptomic, biochemical and structural approaches. Fungal Genetics and Biology, 148, 103506.
– Morin, E., Murat, C., Cichocki, N., De la Varga, H., Kohler, A., Xu, J., … & Martin, F. M. (2021). Draft Genome Sequences of the Black Truffles Tuber brumale Vittad. and Tuber indicum Cook & Massee. Microbiology resource announcements, 10(4), e00799-20.
– Dauphin, B., de Freitas Pereira, M., Kohler, A., Grigoriev, I. V., Barry, K., Na, H., … & Croll, D. (2021). Cryptic genetic structure and copy‐number variation in the ubiquitous forest symbiotic fungus Cenococcum geophilum. Environmental Microbiology.
– Viotti C, Bach C, Maillard F, Ziegler-Devin I, Mieszkin S, Buée M. 2021 Sapwood and heartwood affect differentially bacterial and fungal community structure and successional dynamics during Quercus petraea decomposition. Environmental Microbiology (in press).
– Maillard F, Kennedy PG, Adamczyk B, Heinonsalo J, Buée M. 2021. Root presence modifies the long‐term decomposition dynamics of fungal necromass and the associated microbial communities in a boreal forest. Molecular Ecology 30: 1921-1935.
– Pérez-Izquierdo, L., Rincón, A., Lindahl, B. D., Buée, M. 2021. Fungal community of forest soil: Diversity, functions, and services. In Forest Microbiology (pp. 231-255). Academic Press.
– Niimi J.,Deveau A., Splivallo R. 2021. Aroma and bacterial communities dramatically change with storage of fresh white truffle Tuber magnatum. Food Science and Technology. Accepted.
– Niimi J., Deveau A., Splivallo R. 2021. Geographical based variations in white truffle Tuber magnatum truffle aroma is explained by quantitative differences in key volatile compounds New Phytologist.


– Feldman, E., Martino, E., Kohler, A., Durall, D., & Jones, M. (2021). Selection and Evaluation of Reference Genes for ddPCR-Based Transcript Abundance Studies in Oidiodendron Maius Across Varying Carbon Sources.bioRxiv.
– Ranjan, A., Perrone, I., Alallaq, S., Singh, R., Rigal, A., Brunoni, F., … & Bellini, C. (2021). Molecular basis of differential adventitious rooting competence in poplar genotypes. bioRxiv.
– Guerillot, P., Morin, E., Kohler, A., Louet, C., & Duplessis, S. (2021). A comprehensive collection of transcriptome data to support life cycle analysis of the poplar rust fungus Melampsora larici-populina. bioRxiv.
– Mesny, F., Miyauchi, S., Thiergart, T., Pickel, B., Atanasova, L., Karlsson, M., … & Hacquard, S. (2021). Genetic determinants of endophytism in the Arabidopsis root mycobiome. bioRxiv.
– Looney, B. P., Miyauchi, S., Morin, E., Drula, E., Courty, P. E., Kohler, A. P., … & Martin, F. M. (2021). Evolutionary priming and transition to the ectomycorrhizal habit in an iconic lineage of mushroom-forming fungi: is preadaptation a requirement?. bioRxiv.