Publications 2021

  1. Barroso‐Bergada D, Pauvert C, Vallance J, Delière L, Bohan DA, Buée M, Vacher C. 2021. Microbial networks inferred from environmental DNA data for biomonitoring ecosystem change: strengths and pitfalls. Molecular Ecology Resources. DOI: 10.1111/1755-0998.13302
  2. Colin, Y., Turpault, MP., Fauchery, L., Buée, M., Uroz, S.(2021) Forest plant cover and mineral type determine the diversity and composition of mineral-colonizing fungal communities. European Journal of Soil Biology 105, 103334
  3. Fracchia, F., Mangeot-Peter, L., Jacquot, L., Martin, F., Veneault-Fourrey, C., Deveau, A. (2021) Colonization of naïve roots from Populus tremula x alba involves successive waves of fungi and bacteria with different trophic abilities. Appl Environ Microbiol. 87(6):e02541-20 . doi:10.1128/AEM.02541-20.
  4. Mieszkin, S., Richet, P., Bach, C., Lambrot, C., Augusto, L., Buée, M., & Uroz, S. (2021). Oak decaying wood harbors taxonomically and functionally different bacterial communities in sapwood and heartwood. Soil Biology and Biochemistry, 155, 108160.
  5. Picard, L., Paris, C., Dhalleine, T., Morin, E., Oger, P., Turpault, M. P., & Uroz, S. (2021). The mineral weathering ability of Collimonas pratensis PMB3 (1) involves a Malleobactin‐mediated iron acquisition system. Environmental Microbiology.
  6. Picard, L., Turpault, M. P., Oger, P. M., & Uroz, S. (2021). Identification of a novel type of glucose dehydrogenase involved in the mineral weathering ability of Collimonas pratensis strain PMB3 (1). FEMS Microbiology Ecology, 97(1), fiaa232.
  7. Thomas, F., Le Duff, N., Wu, T. D., Cébron, A., Uroz, S., Riera, P., … & Guerquin-Kern, J. L. (2021). Isotopic tracing reveals single-cell assimilation of a macroalgal polysaccharide by a few marine Flavobacteria and Gammaproteobacteria. The ISME Journal, 1-14.
  8. Veneault-Fourrey, C., Rep, M. (2021) Quantitative resistance linked to late effectors. New Phytologist. 231: 1301–1303 doi: 10.1111/nph.17292.
  9. Lebreton, A., Zeng, Q., Miyauchi, S., Kohler, A., Dai, Y. C., & Martin, F. M. (2021). Evolution of the Mode of Nutrition in Symbiotic and Saprotrophic Fungi in Forest Ecosystems. Annual Review of Ecology, Evolution, and Systematics, 52.
  10. Skrede, I., Murat, C., Hess, J., Maurice, S., Sønstebø, J. H., Kohler, A., … & Kauserud, H. (2021). Contrasting demographic histories revealed in two invasive populations of the dry rot fungus Serpula lacrymans. Molecular Ecology, 30(12), 2772-2789.
  11. Plett, K. L., Kohler, A., Lebel, T., Singan, V. R., Bauer, D., He, G., … & Anderson, I. C. (2021). Intra‐species genetic variability drives carbon metabolism and symbiotic host interactions in the ectomycorrhizal fungus Pisolithus microcarpus. Environmental Microbiology, 23(4), 2004-2020.
  12. Perrot, T., Schwartz, M., Deroy, A., Girardet, J. M., Kohler, A., Morel-Rouhier, M., … & Didierjean, C. (2021). Diversity of Omega Glutathione Transferases in mushroom-forming fungi revealed by phylogenetic, transcriptomic, biochemical and structural approaches. Fungal Genetics and Biology, 148, 103506.
  13. Morin, E., Murat, C., Cichocki, N., De la Varga, H., Kohler, A., Xu, J., … & Martin, F. M. (2021). Draft Genome Sequences of the Black Truffles Tuber brumale Vittad. and Tuber indicum Cook & Massee. Microbiology resource announcements, 10(4), e00799-20.
  14. Dauphin, B., de Freitas Pereira, M., Kohler, A., Grigoriev, I. V., Barry, K., Na, H., … & Croll, D. (2021). Cryptic genetic structure and copy‐number variation in the ubiquitous forest symbiotic fungus Cenococcum geophilum. Environmental Microbiology.
  15. Viotti C, Bach C, Maillard F, Ziegler-Devin I, Mieszkin S, Buée M. 2021 Sapwood and heartwood affect differentially bacterial and fungal community structure and successional dynamics during Quercus petraea decomposition. Environmental Microbiology (in press).
  16. Maillard F, Kennedy PG, Adamczyk B, Heinonsalo J, Buée M. 2021. Root presence modifies the long‐term decomposition dynamics of fungal necromass and the associated microbial communities in a boreal forest. Molecular Ecology 30: 1921-1935.
  17. Pérez-Izquierdo, L., Rincón, A., Lindahl, B. D., Buée, M. 2021. Fungal community of forest soil: Diversity, functions, and services. In Forest Microbiology (pp. 231-255). Academic Press.
  18. Niimi J.,Deveau A., Splivallo R. 2021. Aroma and bacterial communities dramatically change with storage of fresh white truffle Tuber magnatum. Food Science and Technology. Accepted.
  19. Niimi J., Deveau A., Splivallo R. 2021. Geographical based variations in white truffle Tuber magnatum truffle aroma is explained by quantitative differences in key volatile compounds New Phytologist.


  1. Feldman, E., Martino, E., Kohler, A., Durall, D., & Jones, M. (2021). Selection and Evaluation of Reference Genes for ddPCR-Based Transcript Abundance Studies in Oidiodendron Maius Across Varying Carbon Sources.bioRxiv.
  2. Ranjan, A., Perrone, I., Alallaq, S., Singh, R., Rigal, A., Brunoni, F., … & Bellini, C. (2021). Molecular basis of differential adventitious rooting competence in poplar genotypes. bioRxiv.
  3. Guerillot, P., Morin, E., Kohler, A., Louet, C., & Duplessis, S. (2021). A comprehensive collection of transcriptome data to support life cycle analysis of the poplar rust fungus Melampsora larici-populina. bioRxiv.
  4. Mesny, F., Miyauchi, S., Thiergart, T., Pickel, B., Atanasova, L., Karlsson, M., … & Hacquard, S. (2021). Genetic determinants of endophytism in the Arabidopsis root mycobiome. bioRxiv.
  5. Looney, B. P., Miyauchi, S., Morin, E., Drula, E., Courty, P. E., Kohler, A. P., … & Martin, F. M. (2021). Evolutionary priming and transition to the ectomycorrhizal habit in an iconic lineage of mushroom-forming fungi: is preadaptation a requirement?. bioRxiv.