Tuber Melanosporum

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  • Repeat element library produced using RepeatScout in fasta format. The annotation to known transposable elements or as not categorized (no cat) for each consensus sequence is indicated.
  • Putative Full-length gypsy retrotransposons produced using LTRSTRUCT
  • A table summarizing the manually annotated genes models (26-10-2009)
  • A table summarizing Tuber melanosporum mating genes
  • A table summarizing KEGG, PFAM, KOG best BLAST, SignalP and TargetP data for Tuber Gene Models
  • A zip file containing the Best Reciprocal Hit (BRH) tests. The BRH tests are presented as HTML table. Files are named GSTUMTXXXXX_brh.html
  • A zip file containing Clustalw alignments of Tuber gene models (protein sequence) with the best blastp hits in the 5 reference Ascomycota. Alignments are in text files named GSTUMTXXXXX.fa.aln
  • A table compiling members of the different Tribe-MCL protein families of Tuber and eight other ascomycete genomes
  • A table summarizing RNA-seq expression data for Tuber Gene Models (restricted access)
  • The annotated genes are a set of 300 genes annotated for gene prediction purpose :
  • 442,326 SNPs resource from six Tuber melanosporum isolates resequencing corresponding to the short read archives project (SRP044130)
  • 60,507 SNPs resource free of selection from six Tuber melanosporum isolates resequencing corresponding to the short read archives project (SRP044130)
  • Scripts used in the article "A survey of genome-wide single nucleotide polymorphisms through genome re-sequencing in the Périgord black truffle (Tuber melanosporum Vittad.)" by Payen et al.
  • Note: “The Genoscope and INRA provides these data in good faith, but makes no warranty, expressed or implied, nor assumes any legal liability or responsibility for any purpose for which the data are used.”