Tuber melanosporum DB

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Gene Name: GSTUMT00011658001
Length(AA) : 516
Localization : scaffold_89
Number of EST contigs matching the gene: 1
Number of ESTs : 8
  User annotation : No user annotation

Blast Results:

Nr Definition: conserved hypothetical protein
Specie: [Aspergillus terreus NIH2624]
Accession: ref|XP_001215362.1| Score: 191 E_value: 2e-12
KEGG Definition: conserved hypothetical protein
Accession: afm:AFUA_5G13280 Score: 182 E_value: 8e-12
KOG Definition: No Hit Found
PFAM Definition: No Hit Found
Swissprot: No Hit Found

SignalP

SignalP 3.0 predicts the presence and location of signal peptide cleavage sites in amino acid sequences.
The method incorporates a prediction of cleavage sites and a signal peptide/non-signal peptide prediction
based on a combination of several artificial neural networks and hidden Markov models.

Neural networkHMM
Smean scoreSmean predictionSmax scoreSmax predictionD-scoreD predictionHMM prediction
0.118NO0.372NO0.104NON

TargetP

TargetP 1.1 predicts the subcellular location of eukaryotic proteins. The location assignment is based on
the predicted presence of any of the N-terminal presequences: mitochondrial targeting peptide (mTP)
or secretory pathway signal peptide (SP).

Mitochondrion ScoreSecretory ScoreAny other locationLocalizationReliability classPredicted presenquence length
0.1810.160.744_30

TMHMM

Prediction of transmembrane helices in proteins

ExpAA=0.02836First60=0.00065PredHel=0
Topology=()

ExpAA: The expected number of amino acids intransmembrane helices.
First60: The expected number of amino acids in transmembrane helices in the first 60 amino acids of the protein.
PredHel: The number of predicted transmembrane helices by N-best.
Topology: The topology predicted by N-best.

Sequence:
>GSTUMT00011658001
MFDFLMNPEPGRSSGRPQLPLDIVSSIISRIESPADLARVSRSSRIHHFL
TVPLLYKNVVLICRHEERKPSITLAQMGALLKPGIAACVRRLEVISEKPS
GQDRRGEDRGVWAVAVVGIISGMNTLEEFLWNSESMMHPILYEALSRHPK
LKGLRIIHPLSLHPPPPPSFAPPIIFRNLKSIHLTGLGSRTTYNWGMSSM
PALQIFKVSWRISTRLSVIFPEQRPAKSPRVLKELHISNVVLDIPIHQCL
DLVELQKLSLLDCSVGESSSWDEILCAEEQKVANSGSPASALSGGDGGVT
RQSPKPRVRRLKLKSLRINDVGKHWISFLSSFAGLEELYILPSTSVIEEE
AVEPFLDAIINFHGSTIRNLRLSTSQPVERRCASKLVRSCKGLEEVSLRI
PKSEWKFIEILILLLTRIRVFQLLTTDLSSHAEEYDELLAHREESERQVA
QGGESLMEIFGFGTKWAWVIDRTPSWVDGVDPETGKVEKRKVKKGHIERI
SILSEKVGVWKAEERI

EST contigs matching with the Gene:

ContigBest BlastXE-value
Contig1277 conserved hypothetical protein [Aspergillus terreus NIH2624]7e-13


Manual Annotation:

Please find below the necessary files for GSTUMT00011658001 annotation :

link to GSTUMT00011658001 Artemis file
link to scaffold_89 sequence file
link to scaffold_89ESTs