Tuber melanosporum DB

You are here: MycorWeb Genome resources Tuber melanosporum DB EST & Gene Sequences Gene card

Gene Name: GSTUMT00011339001
Length(AA) : 855
Localization : scaffold_82
Number of EST contigs matching the gene: 2
Number of ESTs : 2
  User annotation : No user annotation

Blast Results:

Nr Definition: hypothetical protein FG04602.1
Specie: [Gibberella zeae PH-1]
Accession: ref|XP_384778.1| Score: 741 E_value: 5e-76
KEGG Definition: hypothetical protein
Accession: fgr:FG04602.1 Score: 741 E_value: 2e-76
KOG Definition: No Hit Found
PFAM Definition: No Hit Found
Swissprot: No Hit Found

SignalP

SignalP 3.0 predicts the presence and location of signal peptide cleavage sites in amino acid sequences.
The method incorporates a prediction of cleavage sites and a signal peptide/non-signal peptide prediction
based on a combination of several artificial neural networks and hidden Markov models.

Neural networkHMM
Smean scoreSmean predictionSmax scoreSmax predictionD-scoreD predictionHMM prediction
0.888YES0.985YES0.889YESY

TargetP

TargetP 1.1 predicts the subcellular location of eukaryotic proteins. The location assignment is based on
the predicted presence of any of the N-terminal presequences: mitochondrial targeting peptide (mTP)
or secretory pathway signal peptide (SP).

Mitochondrion ScoreSecretory ScoreAny other locationLocalizationReliability classPredicted presenquence length
0.1070.6970.06S324

TMHMM

Prediction of transmembrane helices in proteins

ExpAA=122.989First60=10.0929PredHel=4
Topology=(255-277,292-314,382-404,409-431)

ExpAA: The expected number of amino acids intransmembrane helices.
First60: The expected number of amino acids in transmembrane helices in the first 60 amino acids of the protein.
PredHel: The number of predicted transmembrane helices by N-best.
Topology: The topology predicted by N-best.

Sequence:
>GSTUMT00011339001
MALTASKLRASIVIFLALTPRALAADGVDFSNNLFSDLAPVLALFGEQVS
KQFLSQSLTWLEDVIFAMAPLGIVTAIVSAVRAGGPGWLKAVVGRARESR
AVAEVELMSSTSHEVCELWNGEAIVRVMGSTKFAEILYFQDGADGKGGSK
FFTLEAAKENGILINAKKRREDRPTHGEGTVFAGLGLPDRILSTFRGPFV
RLDPEGAYTRNATAGREYELRRRHQRAAPTHATPTRDTDPISTPNISLNI
CGARGQGELWVFAILGIVLQFGCLIFIGVTRYHPKLNWKEEKNSKYAYPL
MASGTLLLVVGMMACSRVVQASSEEDIWVSKRSFRILWLQKGDRVNDQLF
KSYALFGDKEREELVTSRRRPHSSPRTSSRTKHVIDVILSLSTLTIAGAF
IGIAGFVVQFVGIRALHWSASIAQLVVTLTMTTVRTWIRRKMSKRPKAMK
LPVDDEIDWVAVRIGASQDALWKPKPNGPEGARDSDPTWEVITLHGYLGY
KGAYAGHIAPIGEAQAILGLRKDLGDLMSWDEISYSFASKLVECLQSLLF
YFIDSGEIALAKTVTRPAVLHWALPVKVGGTVQYITMTASRGSSFQWNVD
TSELCAVISLWCYGVKSKDIQNTYKYWSYRADPETVLRVLGPATHRFVSD
CERWMDRGGRFAVVENARLWENTIEGRATEVNAQELSKIITRVRDHTDHT
TDPSPPTDDIAPYRITGTKPINIDGCYKSLAFVSTAPLKQMCAQEILSSL
LWAIVGIVGSVPDDTQSRSATPSGDHESEVDEQPDPTPENPFLQELAEII
TNSGVTSNIQDAYALIIPPFAAADKLPRRPSDGFTQDEIESIRPQPTSDT
NLPSL

EST contigs matching with the Gene:

ContigBest BlastXE-value
SY0AAB27YI04FM1 hypothetical protein CHGG_00273 [Chaetomium globosum CBS 148.51]5e-06
SY0AAB47YB17FM1 No hit found


Manual Annotation:

Please find below the necessary files for GSTUMT00011339001 annotation :

link to GSTUMT00011339001 Artemis file
link to scaffold_82 sequence file
link to scaffold_82ESTs