Tuber melanosporum DB

You are here: MycorWeb Genome resources Tuber melanosporum DB EST & Gene Sequences Gene card

Gene Name: GSTUMT00011152001
Length(AA) : 100
Localization : scaffold_8
Number of EST contigs matching the gene: 1
Number of ESTs : 6
  User annotation : No user annotation

Blast Results:

Nr Definition: unnamed protein product
Specie: [Aspergillus oryzae]
Accession: dbj|BAE65002.1| Score: 170 E_value: 5e-11
KEGG Definition: unnamed protein product
Accession: aor:AO090011000509 Score: 170 E_value: 2e-11
KOG Definition: No Hit Found
PFAM Definition: No Hit Found
Swissprot: No Hit Found

SignalP

SignalP 3.0 predicts the presence and location of signal peptide cleavage sites in amino acid sequences.
The method incorporates a prediction of cleavage sites and a signal peptide/non-signal peptide prediction
based on a combination of several artificial neural networks and hidden Markov models.

Neural networkHMM
Smean scoreSmean predictionSmax scoreSmax predictionD-scoreD predictionHMM prediction
0.025NO0.057NO0.023NON

TargetP

TargetP 1.1 predicts the subcellular location of eukaryotic proteins. The location assignment is based on
the predicted presence of any of the N-terminal presequences: mitochondrial targeting peptide (mTP)
or secretory pathway signal peptide (SP).

Mitochondrion ScoreSecretory ScoreAny other locationLocalizationReliability classPredicted presenquence length
0.4540.0320.701_40

TMHMM

Prediction of transmembrane helices in proteins

ExpAA=0First60=0PredHel=0
Topology=()

ExpAA: The expected number of amino acids intransmembrane helices.
First60: The expected number of amino acids in transmembrane helices in the first 60 amino acids of the protein.
PredHel: The number of predicted transmembrane helices by N-best.
Topology: The topology predicted by N-best.

Sequence:
>GSTUMT00011152001
MVAPKPELRRSFDDREGHSNRLRGHRLSPLRYPKGLHQGHWQSFSILLDH
DCPRLRQHPYRTGAHRYNRLLHEPRTMHPVRLSPHGRHPTQRIPPLFTML

EST contigs matching with the Gene:

ContigBest BlastXE-value
Contig4596 hypothetical protein BC1G_01035 [Botryotinia fuckeliana B05.10]4e-26


Manual Annotation:

Please find below the necessary files for GSTUMT00011152001 annotation :

link to GSTUMT00011152001 Artemis file
link to scaffold_8 sequence file
link to scaffold_8ESTs