Tuber melanosporum DB

You are here: MycorWeb Genome resources Tuber melanosporum DB EST & Gene Sequences Gene card

Gene Name: GSTUMT00011125001
Length(AA) : 390
Localization : scaffold_8
Number of EST contigs matching the gene: 2
Number of ESTs : 5
  User annotation : No user annotation

Blast Results:

Nr Definition: predicted protein
Specie: [Aspergillus terreus NIH2624]
Accession: ref|XP_001212451.1| Score: 486 E_value: 7e-47
KEGG Definition: hypothetical protein
Accession: ang:An06g01600 Score: 484 E_value: 6e-47
KOG Definition: No Hit Found
PFAM Definition: No Hit Found
Swissprot: No Hit Found

SignalP

SignalP 3.0 predicts the presence and location of signal peptide cleavage sites in amino acid sequences.
The method incorporates a prediction of cleavage sites and a signal peptide/non-signal peptide prediction
based on a combination of several artificial neural networks and hidden Markov models.

Neural networkHMM
Smean scoreSmean predictionSmax scoreSmax predictionD-scoreD predictionHMM prediction
0.339NO0.670NO0.272NON

TargetP

TargetP 1.1 predicts the subcellular location of eukaryotic proteins. The location assignment is based on
the predicted presence of any of the N-terminal presequences: mitochondrial targeting peptide (mTP)
or secretory pathway signal peptide (SP).

Mitochondrion ScoreSecretory ScoreAny other locationLocalizationReliability classPredicted presenquence length
0.0280.6130.458S522

TMHMM

Prediction of transmembrane helices in proteins

ExpAA=0.03131First60=0.01603PredHel=0
Topology=()

ExpAA: The expected number of amino acids intransmembrane helices.
First60: The expected number of amino acids in transmembrane helices in the first 60 amino acids of the protein.
PredHel: The number of predicted transmembrane helices by N-best.
Topology: The topology predicted by N-best.

Sequence:
>GSTUMT00011125001
MADTATAIFDFSAVIALNDALATNQNSNPLVINPEKISGTTPHRSLGDFT
PLWDFLGSSPVPCTTTDEDDPSPPTQIHPSPRRKRKTRHSSSFKIDAVTQ
ETPPVVRLRGMETPAPLQPVFQQPMPSAVTNASLEDPFDKRPVIRSQMTS
VERKAQLIQKILSLFPAQASRLLIRPGLRSGAKDPSDTDIHVFVDASNIL
IGFYECIKKRRGYSRGAAIRQPAFSFHGLSLILERGRISSKRVYVGSSPT
TVSALEARSLGYEVSLLERVEKERVNTKYSSSSGSEGAHKRRPRKVEQAV
DEILHLKILESVLDFTPTTIVLASGDAAQGEYSPGFFKVVERCLDRGWKI
ELVSFKASLSWLYSNKDFLEKWKGAFSLVLLDTFVEELLE

EST contigs matching with the Gene:

ContigBest BlastXE-value
Contig1304 No hit found
Contig3007 predicted protein [Aspergillus terreus NIH2624]1e-37


Manual Annotation:

Please find below the necessary files for GSTUMT00011125001 annotation :

link to GSTUMT00011125001 Artemis file
link to scaffold_8 sequence file
link to scaffold_8ESTs