Tuber melanosporum DB

You are here: MycorWeb Genome resources Tuber melanosporum DB EST & Gene Sequences Gene card

Gene Name: GSTUMT00009252001
Length(AA) : 1170
Localization : scaffold_54
Number of EST contigs matching the gene: 2
Number of ESTs : 5
  User annotation : No user annotation

Blast Results:

Nr Definition: hypothetical protein
Specie: [Cryptococcus neoformans var. neoformans JEC21]
Accession: ref|XP_570765.1| Score: 349 E_value: 2e-30
KEGG Definition: hypothetical protein
Accession: cne:CNE01530 Score: 349 E_value: 9e-31
KOG Definition: No Hit Found
PFAM Definition: No Hit Found
Swissprot: No Hit Found

SignalP

SignalP 3.0 predicts the presence and location of signal peptide cleavage sites in amino acid sequences.
The method incorporates a prediction of cleavage sites and a signal peptide/non-signal peptide prediction
based on a combination of several artificial neural networks and hidden Markov models.

Neural networkHMM
Smean scoreSmean predictionSmax scoreSmax predictionD-scoreD predictionHMM prediction
0.326NO0.921YES0.312NON

TargetP

TargetP 1.1 predicts the subcellular location of eukaryotic proteins. The location assignment is based on
the predicted presence of any of the N-terminal presequences: mitochondrial targeting peptide (mTP)
or secretory pathway signal peptide (SP).

Mitochondrion ScoreSecretory ScoreAny other locationLocalizationReliability classPredicted presenquence length
0.1020.5030.478S542

TMHMM

Prediction of transmembrane helices in proteins

ExpAA=1.45435First60=0.05043PredHel=0
Topology=()

ExpAA: The expected number of amino acids intransmembrane helices.
First60: The expected number of amino acids in transmembrane helices in the first 60 amino acids of the protein.
PredHel: The number of predicted transmembrane helices by N-best.
Topology: The topology predicted by N-best.

Sequence:
>GSTUMT00009252001
MASPPFYIPFAHWDSTPFQPPYTPVTTSKFLTGWLVLGLANGELLILSTA
TDDPIPRARLCGHKDPVVALEPLLVRTETTEQELLLSLDSVGTLCKWSLA
DGRCLQNVYSTVSSRPRGLRIVKKQKADAKDPVVMIYGASTEILVLNAET
LETVLLWTGNLDWPFPVVSGRSRVMTLLPDGQIQGWGLNGRSIGEDGRGR
LALAMERDHTKQLSAEIKEDMGRIRGFERVSEKGYVIIQKTGVSSYVLED
TKFALKEIMSVGLEVGIAGYQIVPKKGVRKALVMAWSEDGQIRLFELGEN
MTFGHSIKLSLKPVRGRGTVISMACTRQEDKYLIAAFSHLWSDSGRQRAH
GDFLTGVFSTNAARMDIEWMEKNKALTSSSLIQDDITSSCSGIFANMLAI
AYGSNIRLHSLSSFLLSYHDPIKEIHIPTTARICLLKRVRVGEHVAHGKD
AGIKGGKEYLIVGTTNGELFIIEAPSFQLSKRLPISSTTVRSANLLLSNL
GKRLRFALIASSADGTTTIVDVERAHIMVTFPSHDYTPLVSYATKTAQNI
ILLTYEDYVRREWDLGEEDGGVLKAHPSSRGNDRDRGALGTYERDLAEEG
WREVRVGKFELVEEDREDEGDDANGDGTIKNCERLCERGLPAASVNVRAV
LDALSHAVKIAKERTRAGERRVVGNHPALITAKSLLTSLVPGGIEELLGW
EEDGHGWRTSVQSLFFRRKKAAVFGQMGAGKNVSILVREASKETEDGILG
ISPTVSACVLLAALSIVGGLLEASGNGEFFDNVIEGALGRLAITKNEPAL
GVFAKYWMDENPIMRATARKCLSISVGTLSEERRANTIAYWARFLPVQVP
PELFSSKEMVRSVIILGQLITAHPDSVEQGLKKCIALSVELLLGDSNHSF
QDTAIELVGHGWTTFQSLFDPFEVIHILIRISASTMDDFSENRRKTLNKC
ILEIAEKNSPLLGSGLANNISYGSSSSQPAALAAVSLSTALSVSVAAMRI
VTMIVREDAILFRDVLGLIIAAVVKILDPNGGLREKVMPTITELINEMVE
AYPSIAFHRPTQRLALSISPGIIMIYDLKTSAQVNALQGHHSLANFLTFS
IDGKFLAAVDLEENMFLVWKFVTGLLSFIGGGNDGAPAILLPKRKEAFDN
KRNVGIVEIEVCMTVPCSGD

EST contigs matching with the Gene:

ContigBest BlastXE-value
Contig1382 WD repeat protein (possible) [Schizosaccharomyces pombe 972h-]1e-07
SY0AAC51YM07FM1 No hit found


Manual Annotation:

Please find below the necessary files for GSTUMT00009252001 annotation :

link to GSTUMT00009252001 Artemis file
link to scaffold_54 sequence file
link to scaffold_54ESTs