Tuber melanosporum DB

You are here: MycorWeb Genome resources Tuber melanosporum DB EST & Gene Sequences Gene card

Gene Name: GSTUMT00009209001
Length(AA) : 331
Localization : scaffold_54
Number of EST contigs matching the gene: 1
Number of ESTs : 1
  User annotation : No user annotation

Blast Results:

Nr Definition: hypothetical protein CHGG_04398
Specie: [Chaetomium globosum CBS 148.51]
Accession: ref|XP_001223612.1| Score: 151 E_value: 4e-08
KEGG Definition: conserved hypothetical protein
Accession: afm:AFUA_1G10470 Score: 119 E_value: 9e-05
KOG Definition: No Hit Found
PFAM Definition: No Hit Found
Swissprot: No Hit Found

SignalP

SignalP 3.0 predicts the presence and location of signal peptide cleavage sites in amino acid sequences.
The method incorporates a prediction of cleavage sites and a signal peptide/non-signal peptide prediction
based on a combination of several artificial neural networks and hidden Markov models.

Neural networkHMM
Smean scoreSmean predictionSmax scoreSmax predictionD-scoreD predictionHMM prediction
0.213NO0.485NO0.176NON

TargetP

TargetP 1.1 predicts the subcellular location of eukaryotic proteins. The location assignment is based on
the predicted presence of any of the N-terminal presequences: mitochondrial targeting peptide (mTP)
or secretory pathway signal peptide (SP).

Mitochondrion ScoreSecretory ScoreAny other locationLocalizationReliability classPredicted presenquence length
0.3230.0730.451_50

TMHMM

Prediction of transmembrane helices in proteins

ExpAA=1.44155First60=0.83838PredHel=0
Topology=()

ExpAA: The expected number of amino acids intransmembrane helices.
First60: The expected number of amino acids in transmembrane helices in the first 60 amino acids of the protein.
PredHel: The number of predicted transmembrane helices by N-best.
Topology: The topology predicted by N-best.

Sequence:
>GSTUMT00009209001
MHHVLRWSNSPSRTVTVSHEKALGITLSLSVYEFIPAYPGQLVYWYKDVS
GWQSMGTTSYAMKRGINTEILEKYIDDHTWFYVESAFTTSPILSEIFRSA
WRYSRSGENFMLRDALQLWTATQLLLNGATLHPSSDSLGISPIPSSTCPL
ANQTPLPRVLANQLDHLIERRIWQLEKQILNELQKRIFGRKREDWLRIFF
TLAVLMSALERDSWRLYYWVFHMEDGYAWRHPSPPQRLVEKNNILAESLA
AHFAAISKGLTPFSLDWSREQSVALIGNCGDAPLMLESMERIGRGLRSPD
HALRVENVLSHYRENDEKSLDFLYTSKVMVV

EST contigs matching with the Gene:

ContigBest BlastXE-value
SY0AAB58YN17FM1 No hit found


Manual Annotation:

Please find below the necessary files for GSTUMT00009209001 annotation :

link to GSTUMT00009209001 Artemis file
link to scaffold_54 sequence file
link to scaffold_54ESTs