Tuber melanosporum DB

You are here: MycorWeb Genome resources Tuber melanosporum DB EST & Gene Sequences Gene card

Gene Name: GSTUMT00008330001
Length(AA) : 1467
Localization : scaffold_45
Number of EST contigs matching the gene: 1
Number of ESTs : 4
  User annotation : No user annotation

Blast Results:

Nr Definition: hypothetical protein BC1G_05548
Specie: [Botryotinia fuckeliana B05.10]
Accession: ref|XP_001555873.1| Score: 953 E_value: 1e-100
KEGG Definition: ankyrin repeat
Accession: aor:AO090001000528 Score: 810 E_value: 4e-84
KOG Definition: Ankyrin
Classification: [Cell wall/membrane/envelope biogenesis].
Kog Number: KOG4177 Score: 520 E_value: 7e-53
PFAM Definition: No Hit Found
Swissprot: Q9ULJ7|ANR50_HUMAN

SignalP

SignalP 3.0 predicts the presence and location of signal peptide cleavage sites in amino acid sequences.
The method incorporates a prediction of cleavage sites and a signal peptide/non-signal peptide prediction
based on a combination of several artificial neural networks and hidden Markov models.

Neural networkHMM
Smean scoreSmean predictionSmax scoreSmax predictionD-scoreD predictionHMM prediction
0.071NO0.178NO0.059NON

TargetP

TargetP 1.1 predicts the subcellular location of eukaryotic proteins. The location assignment is based on
the predicted presence of any of the N-terminal presequences: mitochondrial targeting peptide (mTP)
or secretory pathway signal peptide (SP).

Mitochondrion ScoreSecretory ScoreAny other locationLocalizationReliability classPredicted presenquence length
0.4650.0240.647_50

TMHMM

Prediction of transmembrane helices in proteins

ExpAA=0.07825First60=0.01984PredHel=0
Topology=()

ExpAA: The expected number of amino acids intransmembrane helices.
First60: The expected number of amino acids in transmembrane helices in the first 60 amino acids of the protein.
PredHel: The number of predicted transmembrane helices by N-best.
Topology: The topology predicted by N-best.

Sequence:
>GSTUMT00008330001
MSHAFSNNTNSFNVFNISNHFPVVGGRSEILTWLSPLEPSTRHQDVRVSR
FDKVGDWLLQTHEFRRWCDSTHQDGFHDPALYCYGNPGVGKTYICSLVID
RLCEKARDQNFAVACFYFDYAARNKQSPANMLGSLLKQIVCGMKTVPREI
LLAFEEQKKVIGGQGLRVSEILKMLQTVTLSKRTFICVDAMDECVENHRP
DILDSLAQLLQRSPGTRLFVTGRRHVRDEVQKYLAGKATILSVKPNEDDV
IGFIRARLSKDGFPDAMDSALEAEIIKSISENMTETFLLVSLKIEAILEE
PTIFRRRQRLRAVSEGLDLGGVYGATLARIEGRGAEQKRLGMAALMWISH
SERPLQINELLHALSVGVGSETFNTSNIPSIRTLLSCCLGLVTVDEEAST
VRLIHVTLQEYISTRPGLFDGAHSIIAETCLSYLNFQHIKDLPPTLDAAP
QSSPFLQYSSLYWGAHARRGATSGVISLALNFLSQFENHLSTKLLLMEML
RMIRWYIRDIPTDGRFTGFTGLHCASLFGIVEIVATLTKKKDYKIDNRDF
LGLTPLIWAAICGQEKVAKLLLERQDLDPDKPDTYLRRTALSWAAEMGHE
GVVKLLLGRTSVHSDPMAHIWGQTALCSLVVDNLCDHARVCDSAIACFYF
DYAARIKHSAADVLGPLLRQIVSGSESIPEEVLQNFQDQKVIEGQGLQVS
DITKMLQAVTSSKRTYICVDAMDECEEEHRPDILDSLRQILEASPDTRLF
VTGRRYIKDEVQKHFSGKVATLSITPNEDDVVGYIRMRLSKDIFPDAMND
TLEAEIMKIVPENMSETFLLVSLSINAILKETTVSLRRQRLRATPAGPDL
GGVYSATVARIEEQGRERKKLGMAALMWITHSERPLQVDELLNALAIEIG
SGTLSPGNAPSMRTLLSCCLGLVTVDEEASTVRLIHVTLQEYISTRPGLF
DGAHSIIAETCPSYLNFQHIKDLPPTLDAAPQSSPFLQYSSLYWGAHARR
GATSGLVGQNTTGTKSGLGKKRVNANTQDIWGQTALSLAAGKGHEGVVKL
LLEQRDVNPDKLDKDGHTPLALAARRGYEGVMQLLLERNDVNPNVEDDSG
RTAIFYAAAKGNDAMMQLLLKRKDIDPNLEDRDDRTPLFYAAAKGHGGAV
ELLLVQGDVNTDRPDINGYSPLSMSAMRGHEGVVKLLLGHGAKSDTPDKA
GHTPLSMAANRGHEGVVALLVKRTDVNPDRKDDDGHTPLSLAVVNGYDGV
VKLLLRHKDVNPESQDKLGRTPLLYAAIEGHERVAGILLALVNVSPNRRD
SDGHTPLLAAARSGHGGVIKLLLRCKDVNPDAQDKHGRTSLSIAASLGHE
GVVALLLERGDVNPEKGDNMGRTPLLYAAAKGHEKVVELLLARKDVKPDR
LDKSGRTPLSLAESYGNKRVMELLQARRPTTVRARTLPTISPHRFVPYPP
PHRRHTAQPDCPPSPQP

EST contigs matching with the Gene:

ContigBest BlastXE-value
Contig4069 unnamed protein product [Aspergillus oryzae]8e-31


Manual Annotation:

Please find below the necessary files for GSTUMT00008330001 annotation :

link to GSTUMT00008330001 Artemis file
link to scaffold_45 sequence file
link to scaffold_45ESTs