Tuber melanosporum DB

You are here: MycorWeb Genome resources Tuber melanosporum DB EST & Gene Sequences Gene card

Gene Name: GSTUMT00007701001
Length(AA) : 245
Localization : scaffold_38
Number of EST contigs matching the gene: 3
Number of ESTs : 7
  User annotation : No user annotation

Blast Results:

Nr Definition: hypothetical protein SS1G_00519
Specie: [Sclerotinia sclerotiorum 1980]
Accession: ref|XP_001598430.1| Score: 364 E_value: 4e-33
KEGG Definition: hypothetical protein
Accession: fgr:FG05142.1 Score: 309 E_value: 5e-27
KOG Definition: No Hit Found
PFAM Definition: No Hit Found
Swissprot: No Hit Found


SignalP 3.0 predicts the presence and location of signal peptide cleavage sites in amino acid sequences.
The method incorporates a prediction of cleavage sites and a signal peptide/non-signal peptide prediction
based on a combination of several artificial neural networks and hidden Markov models.

Neural networkHMM
Smean scoreSmean predictionSmax scoreSmax predictionD-scoreD predictionHMM prediction


TargetP 1.1 predicts the subcellular location of eukaryotic proteins. The location assignment is based on
the predicted presence of any of the N-terminal presequences: mitochondrial targeting peptide (mTP)
or secretory pathway signal peptide (SP).

Mitochondrion ScoreSecretory ScoreAny other locationLocalizationReliability classPredicted presenquence length


Prediction of transmembrane helices in proteins


ExpAA: The expected number of amino acids intransmembrane helices.
First60: The expected number of amino acids in transmembrane helices in the first 60 amino acids of the protein.
PredHel: The number of predicted transmembrane helices by N-best.
Topology: The topology predicted by N-best.


EST contigs matching with the Gene:

ContigBest BlastXE-value
Contig1123 hypothetical protein BC1G_02006 [Botryotinia fuckeliana B05.10]7e-28
Contig3152 hypothetical protein BC1G_02006 [Botryotinia fuckeliana B05.10]4e-19
SY0AAB54YE07FM1 hypothetical protein BC1G_02006 [Botryotinia fuckeliana B05.10]4e-10

Manual Annotation:

Please find below the necessary files for GSTUMT00007701001 annotation :

link to GSTUMT00007701001 Artemis file
link to scaffold_38 sequence file
link to scaffold_38ESTs