Tuber melanosporum DB

You are here: MycorWeb Genome resources Tuber melanosporum DB EST & Gene Sequences Gene card

Gene Name: GSTUMT00007143001
Length(AA) : 87
Localization : scaffold_32
Number of EST contigs matching the gene: 1
Number of ESTs : 7
  User annotation : No user annotation

Blast Results:

Nr Definition: conserved hypothetical protein
Specie: [Aspergillus clavatus NRRL 1]
Accession: ref|XP_001272352.1| Score: 197 E_value: 4e-14
KEGG Definition: hypothetical protein
Accession: ncr:NCU06641.1 Score: 178 E_value: 3e-12
KOG Definition: No Hit Found
PFAM Definition: No Hit Found
Swissprot: No Hit Found


SignalP 3.0 predicts the presence and location of signal peptide cleavage sites in amino acid sequences.
The method incorporates a prediction of cleavage sites and a signal peptide/non-signal peptide prediction
based on a combination of several artificial neural networks and hidden Markov models.

Neural networkHMM
Smean scoreSmean predictionSmax scoreSmax predictionD-scoreD predictionHMM prediction


TargetP 1.1 predicts the subcellular location of eukaryotic proteins. The location assignment is based on
the predicted presence of any of the N-terminal presequences: mitochondrial targeting peptide (mTP)
or secretory pathway signal peptide (SP).

Mitochondrion ScoreSecretory ScoreAny other locationLocalizationReliability classPredicted presenquence length


Prediction of transmembrane helices in proteins


ExpAA: The expected number of amino acids intransmembrane helices.
First60: The expected number of amino acids in transmembrane helices in the first 60 amino acids of the protein.
PredHel: The number of predicted transmembrane helices by N-best.
Topology: The topology predicted by N-best.


EST contigs matching with the Gene:

ContigBest BlastXE-value
Contig1165 conserved hypothetical protein [Aspergillus clavatus NRRL 1]3e-13

Manual Annotation:

Please find below the necessary files for GSTUMT00007143001 annotation :

link to GSTUMT00007143001 Artemis file
link to scaffold_32 sequence file
link to scaffold_32ESTs