Tuber melanosporum DB

You are here: MycorWeb Genome resources Tuber melanosporum DB EST & Gene Sequences Gene card

Gene Name: GSTUMT00006859001
Length(AA) : 551
Localization : scaffold_3
Number of EST contigs matching the gene: 2
Number of ESTs : 5
  User annotation : No user annotation

Blast Results:

Nr Definition: hypothetical protein SS1G_12173
Specie: [Sclerotinia sclerotiorum 1980]
Accession: ref|XP_001587143.1| Score: 877 E_value: 5e-92
KEGG Definition: hypothetical protein
Accession: mgr:MGG_03743 Score: 871 E_value: 1e-91
KOG Definition: No Hit Found
PFAM Definition: No Hit Found
Swissprot: No Hit Found

SignalP

SignalP 3.0 predicts the presence and location of signal peptide cleavage sites in amino acid sequences.
The method incorporates a prediction of cleavage sites and a signal peptide/non-signal peptide prediction
based on a combination of several artificial neural networks and hidden Markov models.

Neural networkHMM
Smean scoreSmean predictionSmax scoreSmax predictionD-scoreD predictionHMM prediction
0.046NO0.067NO0.033NON

TargetP

TargetP 1.1 predicts the subcellular location of eukaryotic proteins. The location assignment is based on
the predicted presence of any of the N-terminal presequences: mitochondrial targeting peptide (mTP)
or secretory pathway signal peptide (SP).

Mitochondrion ScoreSecretory ScoreAny other locationLocalizationReliability classPredicted presenquence length
0.1050.0870.884_20

TMHMM

Prediction of transmembrane helices in proteins

ExpAA=5.70001First60=0PredHel=0
Topology=()

ExpAA: The expected number of amino acids intransmembrane helices.
First60: The expected number of amino acids in transmembrane helices in the first 60 amino acids of the protein.
PredHel: The number of predicted transmembrane helices by N-best.
Topology: The topology predicted by N-best.

Sequence:
>GSTUMT00006859001
MAPGPEQTSPPSAPISSDRSPEEMAKAAVEIQRHYRGHRERRHLKGHGLT
PMQRWNDALEEAEYRQVARPVSLERRVELNKQREEGGGGSAALEHGRKPF
CLLNGHNMTTPTIPFLRAVTTAIALIAETLKVQKKGRRKKGKRKRGRNVW
RGLNILKLWTCNIFWKWLIHRYGSNLRAYHSYWQQQDTKENFFYWLDRGE
GREVDLSVCPREQLEKECVRYLSREERQAYLVKIDNEGRLCWAKTGKRID
TSTKYKDTPHGIVPIDSPEAAEEATDGQRYRPGSSSSISSSSSSSSSSSS
SSGSDQSTVADRYIDPNMVAHHGPKKIFHVSASTVLNRLLRKTTKKNTWI
FVADTSFRLYVGIKQTGTFQHSSFLHGGRISAAGLIKIRDGQLRGLSPLS
GHYRPPAANFRRFVHTLKEEGADTSRMSTSKSYAVLLGLETYASLTKGKK
KGKSAARKTVGKGEKTGTHAIATGVDISKGAVKGEEAKLKEVEGEERGGK
GKEGKGKEGKEKGREGKGVKVEKEGGWWKFVRRLRLPGKHSRTKSLTRSA
T

EST contigs matching with the Gene:

ContigBest BlastXE-value
Contig1006 hypothetical protein MGG_03743 [Magnaporthe grisea 70-15]2e-56
Contig1809 hypothetical protein BC1G_11036 [Botryotinia fuckeliana B05.10]1e-38


Manual Annotation:

Please find below the necessary files for GSTUMT00006859001 annotation :

link to GSTUMT00006859001 Artemis file
link to scaffold_3 sequence file
link to scaffold_3ESTs