Tuber melanosporum DB

You are here: MycorWeb Genome resources Tuber melanosporum DB EST & Gene Sequences Gene card

Gene Name: GSTUMT00006720001
Length(AA) : 394
Localization : scaffold_29
Number of EST contigs matching the gene: 2
Number of ESTs : 6
  User annotation : No user annotation

Blast Results:

Nr Definition: Ankyrin repeat protein
Specie: [Aspergillus fumigatus A1163]
Accession: gb|EDP48589.1| Score: 440 E_value: 1e-41
KEGG Definition: hypothetical protein
Accession: ang:An12g05680 Score: 392 E_value: 3e-36
KOG Definition: Ankyrin
Classification: [Cell wall/membrane/envelope biogenesis].
Kog Number: KOG4177 Score: 313 E_value: 2e-29
PFAM Definition: No Hit Found
Swissprot: Q9ERK0|RIPK4_MOUSE

SignalP

SignalP 3.0 predicts the presence and location of signal peptide cleavage sites in amino acid sequences.
The method incorporates a prediction of cleavage sites and a signal peptide/non-signal peptide prediction
based on a combination of several artificial neural networks and hidden Markov models.

Neural networkHMM
Smean scoreSmean predictionSmax scoreSmax predictionD-scoreD predictionHMM prediction
0.233NO0.672NO0.163NON

TargetP

TargetP 1.1 predicts the subcellular location of eukaryotic proteins. The location assignment is based on
the predicted presence of any of the N-terminal presequences: mitochondrial targeting peptide (mTP)
or secretory pathway signal peptide (SP).

Mitochondrion ScoreSecretory ScoreAny other locationLocalizationReliability classPredicted presenquence length
0.0540.5740.545S542

TMHMM

Prediction of transmembrane helices in proteins

ExpAA=0.00176First60=0.0013PredHel=0
Topology=()

ExpAA: The expected number of amino acids intransmembrane helices.
First60: The expected number of amino acids in transmembrane helices in the first 60 amino acids of the protein.
PredHel: The number of predicted transmembrane helices by N-best.
Topology: The topology predicted by N-best.

Sequence:
>GSTUMT00006720001
MPFLHLPNELILQIAGELAPPDLNALLKANWRLAILLSPSLLDSVCRKHH
KFYGKRALYFAAEREDKATVSRLIDRGLLDVVGKGALLNKAVLDQSEKVI
GTLLACGVGADTKNPKGRTPLALAARYGRAEIVRLLLREPAIDVNSADKT
NSTPLLLAATRGHEEVVRLLLNDKRVEVDAQDKRNGTPLHRAIFWGQEAV
VRLLIEDQRSDINLQNIGNPTPLHSAAFWGYSPVVRQLLADPRINVNPTN
YDDWTPLHTAADQTYECVVRALLEDARVAINYNSSSSGTPLHVAAVRGSA
AVVELLLGDPRVQVNLRDGNGNTALHLAGSQEHEQIVSLLLAHKDIDVNI
PNNGGCSVRNLADIPSHYPSNIQKWVLAHDAKGRVNVGCLGKMY

EST contigs matching with the Gene:

ContigBest BlastXE-value
Contig224 Ankyrin repeat protein [Aspergillus fumigatus A1163]5e-21
SY0AAD55YM03FM1 hypothetical protein An12g05680 [Aspergillus niger]6e-11


Manual Annotation:

Please find below the necessary files for GSTUMT00006720001 annotation :

link to GSTUMT00006720001 Artemis file
link to scaffold_29 sequence file
link to scaffold_29ESTs