Tuber melanosporum DB

You are here: MycorWeb Genome resources Tuber melanosporum DB EST & Gene Sequences Gene card

Gene Name: GSTUMT00006513001
Length(AA) : 206
Localization : scaffold_27
Number of EST contigs matching the gene: 1
Number of ESTs : 12
  User annotation : No user annotation

Blast Results:

Nr Definition: No Hit Found
KEGG Definition: No significant hit
KOG Definition: U4/U6-associated splicing factor PRP4
Classification: [RNA processing and modification].
Kog Number: KOG0670 Score: 109 E_value: 3e-06
PFAM Definition: No Hit Found
Swissprot: No Hit Found

SignalP

SignalP 3.0 predicts the presence and location of signal peptide cleavage sites in amino acid sequences.
The method incorporates a prediction of cleavage sites and a signal peptide/non-signal peptide prediction
based on a combination of several artificial neural networks and hidden Markov models.

Neural networkHMM
Smean scoreSmean predictionSmax scoreSmax predictionD-scoreD predictionHMM prediction
0.052NO0.181NO0.049NON

TargetP

TargetP 1.1 predicts the subcellular location of eukaryotic proteins. The location assignment is based on
the predicted presence of any of the N-terminal presequences: mitochondrial targeting peptide (mTP)
or secretory pathway signal peptide (SP).

Mitochondrion ScoreSecretory ScoreAny other locationLocalizationReliability classPredicted presenquence length
0.0980.0780.84_20

TMHMM

Prediction of transmembrane helices in proteins

ExpAA=0.00018First60=0PredHel=0
Topology=()

ExpAA: The expected number of amino acids intransmembrane helices.
First60: The expected number of amino acids in transmembrane helices in the first 60 amino acids of the protein.
PredHel: The number of predicted transmembrane helices by N-best.
Topology: The topology predicted by N-best.

Sequence:
>GSTUMT00006513001
MARDKAGSPWSDAEKLHLLLEIAKQNTSPNWRIIEVPTGRTKSQAQAIFT
TMKSHSTPPPPQGNKKRAREEPGYEQASTPTAGQSSSTTMMPVPITKRKR
GRPTKAETEARKAAEARGEILPKPKPYIPKTTSNVIVGPDGQIRRRRGRP
TKAETEAKKARERDLKKKQGGGDDDEDDDKVRQQLGQSEQSELADDDDDD
DVEEDE

EST contigs matching with the Gene:

ContigBest BlastXE-value
Contig1535 No hit found


Manual Annotation:

Please find below the necessary files for GSTUMT00006513001 annotation :

link to GSTUMT00006513001 Artemis file
link to scaffold_27 sequence file
link to scaffold_27ESTs