Tuber melanosporum DB

You are here: MycorWeb Genome resources Tuber melanosporum DB EST & Gene Sequences Gene card

Gene Name: GSTUMT00005071001
Length(AA) : 382
Localization : scaffold_17
Number of EST contigs matching the gene: 1
Number of ESTs : 1
  User annotation : No user annotation

Blast Results:

Nr Definition: hypothetical protein AN0806.2
Specie: [Aspergillus nidulans FGSC A4]
Accession: ref|XP_658410.1| Score: 258 E_value: 2e-20
KEGG Definition: hypothetical protein
Accession: ani:AN0806.2 Score: 258 E_value: 9e-21
KOG Definition: WD40 repeat protein
Classification: [General function prediction only].
Kog Number: KOG1188 Score: 284 E_value: 4e-26
PFAM Definition: Tymo_45kd_70kd, Tymovirus 45/70Kd protein. Tymoviruses are single stranded RNA viruses. This family includes a protein of unknown function that has been named based on its molecular weight. Tymoviruses such as the ononis yellow mosaic tymovirus encode only three proteins. Of these two are overlapping this protein overlaps a larger ORF that is thought to be the polymerase..
Pfam Number: pfam03251 Score: 140 E_value: 2e-09
Swissprot: Q9Y7T2|YCJ6_SCHPO
Gene Ontology:
GO:0005829 = Cellular component: cytosol
GO:0005634 = Cellular component: nucleus

SignalP

SignalP 3.0 predicts the presence and location of signal peptide cleavage sites in amino acid sequences.
The method incorporates a prediction of cleavage sites and a signal peptide/non-signal peptide prediction
based on a combination of several artificial neural networks and hidden Markov models.

Neural networkHMM
Smean scoreSmean predictionSmax scoreSmax predictionD-scoreD predictionHMM prediction
0.101NO0.321NO0.073NON

TargetP

TargetP 1.1 predicts the subcellular location of eukaryotic proteins. The location assignment is based on
the predicted presence of any of the N-terminal presequences: mitochondrial targeting peptide (mTP)
or secretory pathway signal peptide (SP).

Mitochondrion ScoreSecretory ScoreAny other locationLocalizationReliability classPredicted presenquence length
0.4350.0560.499_50

TMHMM

Prediction of transmembrane helices in proteins

ExpAA=0.25236First60=0.01464PredHel=0
Topology=()

ExpAA: The expected number of amino acids intransmembrane helices.
First60: The expected number of amino acids in transmembrane helices in the first 60 amino acids of the protein.
PredHel: The number of predicted transmembrane helices by N-best.
Topology: The topology predicted by N-best.

Sequence:
>GSTUMT00005071001
MPPRIFHQTSTSNFSTPPGTYIYTLAPLSETHIAASTSSSSLITFSKSTL
TPTSTIPHAHTNITSLGTYPASPQTLLTSGADGLIKLWDLRCSPTAALAS
KINVGAPVLCASANAQGGIIAGTEVQDRASRVCVWDGRVVGEKPTWVFTE
SHGDDVSFVGFAGGEEEGRWGVSGGMDGLVNVFDLLAGKGAGREDDDEKA
LWQVVNVGASVHRAGFLNAGGGGGIVGKGEWVFGVSTDESLVLRSFNHAP
GRGEEEDAEGEVAGDVGDARGRLDCEYVVDVLRVSGTGAGGTIVAGNKEV
GKQRIDLVPLKWIGGQWGFASEDKVKSXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXESILG

EST contigs matching with the Gene:

ContigBest BlastXE-value
SY0AAD5YA15FM1 hypothetical protein AN0806.2 [Aspergillus nidulans FGSC A4]1e-16


Manual Annotation:

Please find below the necessary files for GSTUMT00005071001 annotation :

link to GSTUMT00005071001 Artemis file
link to scaffold_17 sequence file
link to scaffold_17ESTs