Tuber melanosporum DB

You are here: MycorWeb Genome resources Tuber melanosporum DB EST & Gene Sequences Gene card

Gene Name: GSTUMT00004847001
Length(AA) : 331
Localization : scaffold_16
Number of EST contigs matching the gene: 2
Number of ESTs : 7
  User annotation : No user annotation

Blast Results:

Nr Definition: No Hit Found
KEGG Definition: No significant hit
KOG Definition: WASP-interacting protein VRP1/WIP
Classification: [
Kog Number: KOG4462 Score: 121 E_value: 2e-07
PFAM Definition: DUF1421, Protein of unknown function (DUF1421). This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function..
Pfam Number: pfam07223 Score: 116 E_value: 1e-06
Swissprot: No Hit Found

SignalP

SignalP 3.0 predicts the presence and location of signal peptide cleavage sites in amino acid sequences.
The method incorporates a prediction of cleavage sites and a signal peptide/non-signal peptide prediction
based on a combination of several artificial neural networks and hidden Markov models.

Neural networkHMM
Smean scoreSmean predictionSmax scoreSmax predictionD-scoreD predictionHMM prediction
0.060NO0.076NO0.041NON

TargetP

TargetP 1.1 predicts the subcellular location of eukaryotic proteins. The location assignment is based on
the predicted presence of any of the N-terminal presequences: mitochondrial targeting peptide (mTP)
or secretory pathway signal peptide (SP).

Mitochondrion ScoreSecretory ScoreAny other locationLocalizationReliability classPredicted presenquence length
0.1150.2190.761_30

TMHMM

Prediction of transmembrane helices in proteins

ExpAA=123.777First60=3.82133PredHel=6
Topology=(55-74,84-106,160-182,197-219,232-254,276-298)

ExpAA: The expected number of amino acids intransmembrane helices.
First60: The expected number of amino acids in transmembrane helices in the first 60 amino acids of the protein.
PredHel: The number of predicted transmembrane helices by N-best.
Topology: The topology predicted by N-best.

Sequence:
>GSTUMT00004847001
MATTTTATSPRPDEEEDSTPLLGQVTGRDELLVPDPNIYIEVVEAPWDSI
SQHTAFTARLVISLLMSSLLLWHFTVETLAQRLGIFPFQAMNISWTAQVV
YMWLMTYWTYKTTTPAHHASWPSFTPTSPSPTPSSLLIPITFQRFLDITF
PSPYYTFKTCAFYSFYTTITLFPICVTILYLTTLLPHMLSHPALHLSIPE
LLISTLNTPIVLAEILLLNSVTPNTTLLSPRVRALEITFWVVVYVDVWVW
LGNAVVEGGRELDWRFLGEGWGQGGFLKTVGWVVGANAVYFGLWWVGVGK
GLVMKCLRARKVRGGGRGCGRGRSMESGEAS

EST contigs matching with the Gene:

ContigBest BlastXE-value
Contig123 No hit found
Contig989 No hit found


Manual Annotation:

Please find below the necessary files for GSTUMT00004847001 annotation :

link to GSTUMT00004847001 Artemis file
link to scaffold_16 sequence file
link to scaffold_16ESTs