Tuber melanosporum DB

You are here: MycorWeb Genome resources Tuber melanosporum DB EST & Gene Sequences Gene card

Gene Name: GSTUMT00004241001
Length(AA) : 422
Localization : scaffold_11
Number of EST contigs matching the gene: 3
Number of ESTs : 9
  User annotation : No user annotation

Blast Results:

Nr Definition: conserved hypothetical protein
Specie: [Aspergillus clavatus NRRL 1]
Accession: ref|XP_001268818.1| Score: 445 E_value: 4e-42
KEGG Definition: hypothetical protein
Accession: mgr:MGCH7_ch7g712 Score: 443 E_value: 4e-42
KOG Definition: No Hit Found
PFAM Definition: No Hit Found
Swissprot: No Hit Found

SignalP

SignalP 3.0 predicts the presence and location of signal peptide cleavage sites in amino acid sequences.
The method incorporates a prediction of cleavage sites and a signal peptide/non-signal peptide prediction
based on a combination of several artificial neural networks and hidden Markov models.

Neural networkHMM
Smean scoreSmean predictionSmax scoreSmax predictionD-scoreD predictionHMM prediction
0.025NO0.043NO0.024NON

TargetP

TargetP 1.1 predicts the subcellular location of eukaryotic proteins. The location assignment is based on
the predicted presence of any of the N-terminal presequences: mitochondrial targeting peptide (mTP)
or secretory pathway signal peptide (SP).

Mitochondrion ScoreSecretory ScoreAny other locationLocalizationReliability classPredicted presenquence length
0.2770.0310.715_30

TMHMM

Prediction of transmembrane helices in proteins

ExpAA=0.00115First60=0PredHel=0
Topology=()

ExpAA: The expected number of amino acids intransmembrane helices.
First60: The expected number of amino acids in transmembrane helices in the first 60 amino acids of the protein.
PredHel: The number of predicted transmembrane helices by N-best.
Topology: The topology predicted by N-best.

Sequence:
>GSTUMT00004241001
MKRILTTFKREKGDASERYRDAGDRGRSGSSASLAEDDSPEGRIVIATKS
FCESGGPQNQNPGEEVLYLPTIVDLAESSPTAARAAAHTIRKYLETKKNN
SLRPHTQCNAIMLTRILSDNPSCAFTRNLAEAKFVAAVKELLKHGREPSV
RLKLVETLEHFDGRVTARAGVGVGVGGHGDEEVEGLKGLVEVWAKEKRNM
AKLSKSAPASGGGGGLFTGNPNNTNGQYRPHHYYQTQPDLPNMEELAARI
SEAQTSAKLLEQVLQSTPHPEIPRNELIREFADRCKTASRSMQRYISVAS
GGGDGAGDGSGIDEDTLTTLIMTNDLLTMAVGKHARAVKEALEKQEVHKT
VEGARITDVAGRGMDAMGGGGGIGDEPSTPGESGRRGAGPGVNVQRDGQR
EREMVPDSPVSPATPGPVAYRY

EST contigs matching with the Gene:

ContigBest BlastXE-value
Contig4287 hypothetical protein SS1G_14129 [Sclerotinia sclerotiorum 1980]2e-24
SY0AAA22YN14FM1 hypothetical protein SS1G_14129 [Sclerotinia sclerotiorum 1980]8e-24
SY0AAB60YJ02FM1 No hit found


Manual Annotation:

Please find below the necessary files for GSTUMT00004241001 annotation :

link to GSTUMT00004241001 Artemis file
link to scaffold_11 sequence file
link to scaffold_11ESTs