Tuber melanosporum DB

You are here: MycorWeb Genome resources Tuber melanosporum DB EST & Gene Sequences Gene card

Gene Name: GSTUMT00004053001
Length(AA) : 392
Localization : scaffold_1
Number of EST contigs matching the gene: 4
Number of ESTs : 118
  User annotation : No user annotation

Blast Results:

Nr Definition: hypothetical protein CIMG_06712
Specie: [Coccidioides immitis RS]
Accession: ref|XP_001242816.1| Score: 246 E_value: 5e-19
KEGG Definition: hypothetical protein
Accession: fgr:FG09455.1 Score: 221 E_value: 2e-16
KOG Definition: No Hit Found
PFAM Definition: No Hit Found
Swissprot: No Hit Found

SignalP

SignalP 3.0 predicts the presence and location of signal peptide cleavage sites in amino acid sequences.
The method incorporates a prediction of cleavage sites and a signal peptide/non-signal peptide prediction
based on a combination of several artificial neural networks and hidden Markov models.

Neural networkHMM
Smean scoreSmean predictionSmax scoreSmax predictionD-scoreD predictionHMM prediction
0.048NO0.261NO0.049NON

TargetP

TargetP 1.1 predicts the subcellular location of eukaryotic proteins. The location assignment is based on
the predicted presence of any of the N-terminal presequences: mitochondrial targeting peptide (mTP)
or secretory pathway signal peptide (SP).

Mitochondrion ScoreSecretory ScoreAny other locationLocalizationReliability classPredicted presenquence length
0.0690.0380.95_10

TMHMM

Prediction of transmembrane helices in proteins

ExpAA=0.0462First60=0.01188PredHel=0
Topology=()

ExpAA: The expected number of amino acids intransmembrane helices.
First60: The expected number of amino acids in transmembrane helices in the first 60 amino acids of the protein.
PredHel: The number of predicted transmembrane helices by N-best.
Topology: The topology predicted by N-best.

Sequence:
>GSTUMT00004053001
MGSESEDGYINAMPQNSSSQENIASCTVLYACCNTFSLTRSSHSSLGHLT
EKAKEKHTAKHILQVCSVTFLGPPHNFVVHSTPLFSRGGFLKPPHPLPKS
LRILYSIIFGTPKKRSLDMASISTITPYTSYGNPHTSTGALVRGGVIDEP
VVEHEHHHVHHHIDHGNPVAGALVRPRVAREYSYDDLHDRERRYGSGMSL
GSFGHHHGHHYGHRHRGLLGGRFARSDIDLNLDASYRHRRRSIYDDRDSE
LAIIDVPAGTRRVTVDMGREVDINWRRDNGVRRSRGLGSELWTEITKDLV
TREAIEECGYPYEETEFFYYIFDYLHREQINELVDLTHEIRRHRIRDLEY
ESIGVGHPRFDRRLDYDREETRTEIVIEGGHRGHRRRNRYYY

EST contigs matching with the Gene:

ContigBest BlastXE-value
Contig1108 hypothetical protein CIMG_06712 [Coccidioides immitis RS]7e-19
Contig1687 No hit found
Contig1754 No hit found
Contig3510 No hit found


Manual Annotation:

Please find below the necessary files for GSTUMT00004053001 annotation :

link to GSTUMT00004053001 Artemis file
link to scaffold_1 sequence file
link to scaffold_1ESTs