Tuber melanosporum DB

You are here: MycorWeb Genome resources Tuber melanosporum DB EST & Gene Sequences Gene card

Gene Name: GSTUMT00003263001
Length(AA) : 296
Localization : scaffold_165
Number of EST contigs matching the gene: 3
Number of ESTs : 10
  User annotation : No user annotation

Blast Results:

Nr Definition: hypothetical protein SNOG_15080
Specie: [Phaeosphaeria nodorum SN15]
Accession: ref|XP_001805243.1| Score: 1419 E_value: 1e-155
KEGG Definition: hypothetical protein
Accession: ncr:NCU02743.1 Score: 1417 E_value: 1e-155
KOG Definition: Membrane coat complex Retromer
Classification: [
Kog Number: KOG3063 Score: 1261 E_value: 1e-139
PFAM Definition: Vps26, Vacuolar protein sorting-associated protein 26. Vacuolar protein sorting-associated protein (Vps) 26 is one of around 50 proteins involved in protein trafficking. In particular, Vps26 assembles into a retromer complex with at least four other proteins Vps5, Vps17, Vps29 and Vps35. This family also contains Down syndrome critical region 3/A..
Pfam Number: pfam03643 Score: 1125 E_value: 1e-124
Swissprot: Q10243|VPS26_SCHPO
Gene Ontology:
GO:0005829 = Cellular component: cytosol
GO:0005768 = Cellular component: endosome
GO:0005634 = Cellular component: nucleus
GO:0030904 = Cellular component: retromer complex
GO:0006886 = Biological process: intracellular protein transport
GO:0042147 = Biological process: retrograde transport
endosome to Golgi
GO:0030437 = Biological process: ascospore formation


SignalP 3.0 predicts the presence and location of signal peptide cleavage sites in amino acid sequences.
The method incorporates a prediction of cleavage sites and a signal peptide/non-signal peptide prediction
based on a combination of several artificial neural networks and hidden Markov models.

Neural networkHMM
Smean scoreSmean predictionSmax scoreSmax predictionD-scoreD predictionHMM prediction


TargetP 1.1 predicts the subcellular location of eukaryotic proteins. The location assignment is based on
the predicted presence of any of the N-terminal presequences: mitochondrial targeting peptide (mTP)
or secretory pathway signal peptide (SP).

Mitochondrion ScoreSecretory ScoreAny other locationLocalizationReliability classPredicted presenquence length


Prediction of transmembrane helices in proteins


ExpAA: The expected number of amino acids intransmembrane helices.
First60: The expected number of amino acids in transmembrane helices in the first 60 amino acids of the protein.
PredHel: The number of predicted transmembrane helices by N-best.
Topology: The topology predicted by N-best.


EST contigs matching with the Gene:

ContigBest BlastXE-value
Contig4288 vacuolar protein sorting 26 [Neurospora crassa OR74A]6e-72
Contig4837 hypothetical protein SNOG_15080 [Phaeosphaeria nodorum SN15]1e-155
SY0AAD48YF04FM1 unnamed protein product [Tetraodon nigroviridis]7e-52

Manual Annotation:

Please find below the necessary files for GSTUMT00003263001 annotation :

link to GSTUMT00003263001 Artemis file
link to scaffold_165 sequence file
link to scaffold_165ESTs