Tuber melanosporum DB

You are here: MycorWeb Genome resources Tuber melanosporum DB EST & Gene Sequences Gene card

Gene Name: GSTUMT00003257001
Length(AA) : 187
Localization : scaffold_165
Number of EST contigs matching the gene: 1
Number of ESTs : 17
  User annotation : No user annotation

Blast Results:

Nr Definition: No Hit Found
KEGG Definition: hypothetical protein
Accession: ani:AN1267.2 Score: 124 E_value: 8e-06
KOG Definition: No Hit Found
PFAM Definition: No Hit Found
Swissprot: No Hit Found

SignalP

SignalP 3.0 predicts the presence and location of signal peptide cleavage sites in amino acid sequences.
The method incorporates a prediction of cleavage sites and a signal peptide/non-signal peptide prediction
based on a combination of several artificial neural networks and hidden Markov models.

Neural networkHMM
Smean scoreSmean predictionSmax scoreSmax predictionD-scoreD predictionHMM prediction
0.195NO0.215NO0.115NON

TargetP

TargetP 1.1 predicts the subcellular location of eukaryotic proteins. The location assignment is based on
the predicted presence of any of the N-terminal presequences: mitochondrial targeting peptide (mTP)
or secretory pathway signal peptide (SP).

Mitochondrion ScoreSecretory ScoreAny other locationLocalizationReliability classPredicted presenquence length
0.3490.0580.622_40

TMHMM

Prediction of transmembrane helices in proteins

ExpAA=0.00281First60=0.00264PredHel=0
Topology=()

ExpAA: The expected number of amino acids intransmembrane helices.
First60: The expected number of amino acids in transmembrane helices in the first 60 amino acids of the protein.
PredHel: The number of predicted transmembrane helices by N-best.
Topology: The topology predicted by N-best.

Sequence:
>GSTUMT00003257001
MKRQKKRMLKEHVLAPPKVPASNPYSTFMSLEGVTVGADAAKKWKALTPE
QQQEYAEKGRNLHALGLQNREKWVKTYHPLEVYKANKARKHLKRLGGGKK
FDVLKDPRMPKRPTPIGAAFLRDQWNAGTFINPDGSKMPAVLALKHSRDL
YEKLSAAEKKVYEDQFAAERAVYKKAMAELFGDISKL

EST contigs matching with the Gene:

ContigBest BlastXE-value
Contig1269 No hit found


Manual Annotation:

Please find below the necessary files for GSTUMT00003257001 annotation :

link to GSTUMT00003257001 Artemis file
link to scaffold_165 sequence file
link to scaffold_165ESTs