Tuber melanosporum DB

You are here: MycorWeb Genome resources Tuber melanosporum DB EST & Gene Sequences Gene card

Gene Name: GSTUMT00002502001
Length(AA) : 410
Localization : scaffold_131
Number of EST contigs matching the gene: 2
Number of ESTs : 106
  User annotation : No user annotation

Blast Results:

Nr Definition: No Hit Found
KEGG Definition: conserved hypothetical protein
Accession: afm:AFUA_2G11470 Score: 113 E_value: 6e-04
KOG Definition: No Hit Found
PFAM Definition: No Hit Found
Swissprot: No Hit Found

SignalP

SignalP 3.0 predicts the presence and location of signal peptide cleavage sites in amino acid sequences.
The method incorporates a prediction of cleavage sites and a signal peptide/non-signal peptide prediction
based on a combination of several artificial neural networks and hidden Markov models.

Neural networkHMM
Smean scoreSmean predictionSmax scoreSmax predictionD-scoreD predictionHMM prediction
0.104NO0.243NO0.083NON

TargetP

TargetP 1.1 predicts the subcellular location of eukaryotic proteins. The location assignment is based on
the predicted presence of any of the N-terminal presequences: mitochondrial targeting peptide (mTP)
or secretory pathway signal peptide (SP).

Mitochondrion ScoreSecretory ScoreAny other locationLocalizationReliability classPredicted presenquence length
0.6210.0380.447M55

TMHMM

Prediction of transmembrane helices in proteins

ExpAA=0.00283First60=0.00057PredHel=0
Topology=()

ExpAA: The expected number of amino acids intransmembrane helices.
First60: The expected number of amino acids in transmembrane helices in the first 60 amino acids of the protein.
PredHel: The number of predicted transmembrane helices by N-best.
Topology: The topology predicted by N-best.

Sequence:
>GSTUMT00002502001
MSHYAVHTVNPYRGSTGTLAMPHSAPRSGQMVPINPPSPAESTCSSCDSS
LPLNTPWSGTPTSSTTSVSTHHHPHHPSRPRRQSISDGVRIVEAPRMSAD
GRPPPIVVHRRPPVPSPPPTSRSLNAYHTESRAHGTYRGDRALLVPASSG
RDRRRRDSMSGPLSAGALASHGYTRYYKSIDIQDDHEGNADGGIGRRGRT
RFPRKLVSKEAVEEMGLPWTEDLDGCIVVLRALGRTEIERLVDLTEEIRR
RRHSTGKAVSFEEKTIIHEAPPYVPEPPPVSGATVRLNSDHSSHRISKTV
TTTTTTTSPTFGPTGFIGLPGSSQEKLARAEEKAARAEDRATRLEERAEI
TGRAKDEHEAFKARAKAQEKQRKVGETLLKEKVKMEERERSERTLRFQRG
DGRGNVVVLK

EST contigs matching with the Gene:

ContigBest BlastXE-value
Contig112 No hit found
Contig1567 No hit found


Manual Annotation:

Please find below the necessary files for GSTUMT00002502001 annotation :

link to GSTUMT00002502001 Artemis file
link to scaffold_131 sequence file
link to scaffold_131ESTs