Tuber melanosporum DB

You are here: MycorWeb Genome resources Tuber melanosporum DB EST & Gene Sequences Gene card

Gene Name: GSTUMT00001933001
Length(AA) : 752
Localization : scaffold_320
Number of EST contigs matching the gene: 3
Number of ESTs : 5
  User annotation : No user annotation

Blast Results:

Nr Definition: hypothetical protein SS1G_04644
Specie: [Sclerotinia sclerotiorum 1980]
Accession: ref|XP_001594836.1| Score: 270 E_value: 2e-21
KEGG Definition: hypothetical protein
Accession: ang:An04g00300 Score: 251 E_value: 1e-19
KOG Definition: No Hit Found
PFAM Definition: No Hit Found
Swissprot: No Hit Found

SignalP

SignalP 3.0 predicts the presence and location of signal peptide cleavage sites in amino acid sequences.
The method incorporates a prediction of cleavage sites and a signal peptide/non-signal peptide prediction
based on a combination of several artificial neural networks and hidden Markov models.

Neural networkHMM
Smean scoreSmean predictionSmax scoreSmax predictionD-scoreD predictionHMM prediction
0.043NO0.112NO0.036NON

TargetP

TargetP 1.1 predicts the subcellular location of eukaryotic proteins. The location assignment is based on
the predicted presence of any of the N-terminal presequences: mitochondrial targeting peptide (mTP)
or secretory pathway signal peptide (SP).

Mitochondrion ScoreSecretory ScoreAny other locationLocalizationReliability classPredicted presenquence length
0.0890.0480.933_10

TMHMM

Prediction of transmembrane helices in proteins

ExpAA=0.00033First60=0.00033PredHel=0
Topology=()

ExpAA: The expected number of amino acids intransmembrane helices.
First60: The expected number of amino acids in transmembrane helices in the first 60 amino acids of the protein.
PredHel: The number of predicted transmembrane helices by N-best.
Topology: The topology predicted by N-best.

Sequence:
>GSTUMT00001933001
MLAPSVETPDYDAASTFSGAASLFYDSRPGTRIGDFSHSRVRPSTSTNMT
APKRHVRRSLSISNILPINGPRKRGQHDKGLGGEEEGSDGLVGLYSTDLD
VSRRFSEPLVDSPYLLLPRPVSPCMGGEERDPLPPIQSLSALELDMEALP
AMNANDLDDYHLETLSPVDPSYEADTDGDEEEEEDSEPFPQGGRHHQHRL
SVISASERASTLVGSEDLGHFEGDDFQSETVFDSVRTRVSEPTPVRLDAI
FHLPPLEPSEYHLPMGSTKSPMSSDFTPTKGNDVPSSSTPTILTPHIQRS
SMSDDGSSSDWDLPSKSADDPGESRAPTSGALRPLSGLHLSSRLGLNLNN
ASNTSFGTALEGLSIDSSSIRETSSILEWSESIPNNGTPPSLSRRSKAIH
AKESLLSGNRVGRRVPSFHIRSQSVPVVSTARTVPSPSENWDDDFLDDDG
GDGFELARRGMTIPREIEERQASVIGHLGCIREFALLVEDLKRLRDIGNA
SGLRNGANKHLLEEADGIIALATLDDEDTLPSVQPDRSQNRSSWHTPSRH
SEMTFDDDFKSTPRNRRRSSILLPDDDVFGGGNLPTTPSSFPHLMHGFRS
PSASSSPSPLSKKSIDKNDPVEVAKGIMERMQLQHWQTSDHPIGSGKSKG
TWNGGKVQFDTDMLRELVVHVGGLKRNLAELVDCLDSPSLKKHPHYIATS
DVVESPTALEAGEYGLEISPGMGPFDQESYGNGLEKVRSNNGVDFRPIVG
VV

EST contigs matching with the Gene:

ContigBest BlastXE-value
Contig2125 No hit found
SY0AAA2YM05FM1 No hit found
SY0AAA53YL20FM1 hypothetical protein SS1G_04644 [Sclerotinia sclerotiorum 1980]2e-14


Manual Annotation:

Please find below the necessary files for GSTUMT00001933001 annotation :

link to GSTUMT00001933001 Artemis file
link to scaffold_320 sequence file
link to scaffold_320ESTs