Tuber melanosporum DB

You are here: MycorWeb Genome resources Tuber melanosporum DB EST & Gene Sequences Gene card

Gene Name: GSTUMT00001494001
Length(AA) : 602
Localization : scaffold_111
Number of EST contigs matching the gene: 4
Number of ESTs : 14
  User annotation : Tmelhet_111a  [+]

Blast Results:

Nr Definition: hypothetical protein BC1G_06998
Specie: [Botryotinia fuckeliana B05.10]
Accession: ref|XP_001554410.1| Score: 758 E_value: 3e-78
KEGG Definition: ankyrin repeat
Accession: aor:AO090113000090 Score: 756 E_value: 3e-78
KOG Definition: No Hit Found
PFAM Definition: No Hit Found
Swissprot: Q00808|HETE1_PODAN

SignalP

SignalP 3.0 predicts the presence and location of signal peptide cleavage sites in amino acid sequences.
The method incorporates a prediction of cleavage sites and a signal peptide/non-signal peptide prediction
based on a combination of several artificial neural networks and hidden Markov models.

Neural networkHMM
Smean scoreSmean predictionSmax scoreSmax predictionD-scoreD predictionHMM prediction
0.022NO0.084NO0.028NON

TargetP

TargetP 1.1 predicts the subcellular location of eukaryotic proteins. The location assignment is based on
the predicted presence of any of the N-terminal presequences: mitochondrial targeting peptide (mTP)
or secretory pathway signal peptide (SP).

Mitochondrion ScoreSecretory ScoreAny other locationLocalizationReliability classPredicted presenquence length
0.1640.0270.902_20

TMHMM

Prediction of transmembrane helices in proteins

ExpAA=0.02347First60=0PredHel=0
Topology=()

ExpAA: The expected number of amino acids intransmembrane helices.
First60: The expected number of amino acids in transmembrane helices in the first 60 amino acids of the protein.
PredHel: The number of predicted transmembrane helices by N-best.
Topology: The topology predicted by N-best.

Sequence:
>GSTUMT00001494001
MANGYIRSGNSGSYDIYSGGDANSSPSDAEILQCLYTSRYEEHRSRVREP
VEGTCSWVVDHPRYKDWLNEKALSLLWLSGDPGCGKSVTSSFLVERLKSR
PNSIVCYFFFKDDNNEQNNAAIALCAILHQIFMQRKHFIGFAKEGFKAKG
SKLTQEVDALWNILVRAVAGGGCGDVICILDGLDECEESTRARLIRLVAG
LTRSQNFEIPLKLLVTSRPYHDIERGLCLLTPTIRLKGEEEIGAITADIT
RVIDDGIEELETYWGRPGGLGYLRNLLQSSADRTFLWVSLVLAELKGSED
YSSEELTRIVDTAPHELGEFYSKILNKIRSQDKARKILGIVVAAARPLTL
QEMNIAFRIGQGHKSINDLEEFCPEFERTVKNLCGHFVRIIDSKIYLAHR
TAKEFLLKQSSPGQGNWQHTLPSEDSNHILANACLSYLSLEEFGNDPLAM
FAHDGISREVVDEYLNKYPFLDYAARHWADHFRDSQDRQMEFFELTQQIC
KTKSERFLTWLQVYWLNAQGQYDCPTDFTHLMIALWLGQEKVVERLLEGG
GEDINARSQLYGTALNIAVARSNEGVARRLVELNVKAHICGKEYNISDRC
RR

EST contigs matching with the Gene:

ContigBest BlastXE-value
Contig1468 conserved hypothetical protein [Aspergillus terreus NIH2624]4e-36
Contig4807 unnamed protein product [Aspergillus oryzae]3e-33
Contig7286 No hit found
SY0AAB59YA15FM1 conserved hypothetical protein [Aspergillus terreus NIH2624]4e-11


Manual Annotation:

Please find below the necessary files for GSTUMT00001494001 annotation :

link to GSTUMT00001494001 Artemis file
link to scaffold_111 sequence file
link to scaffold_111ESTs