Tuber melanosporum DB

You are here: MycorWeb Genome resources Tuber melanosporum DB EST & Gene Sequences Gene card

Gene Name: GSTUMT00001321001
Length(AA) : 199
Localization : scaffold_277
Number of EST contigs matching the gene: 1
Number of ESTs : 1
  User annotation : No user annotation

Blast Results:

Nr Definition: hypothetical protein MGG_13816
Specie: [Magnaporthe grisea 70-15]
Accession: ref|XP_001404311.1| Score: 172 E_value: 5e-11
KEGG Definition: hypothetical protein
Accession: fgr:FG09861.1 Score: 172 E_value: 3e-11
KOG Definition: No Hit Found
PFAM Definition: No Hit Found
Swissprot: No Hit Found

SignalP

SignalP 3.0 predicts the presence and location of signal peptide cleavage sites in amino acid sequences.
The method incorporates a prediction of cleavage sites and a signal peptide/non-signal peptide prediction
based on a combination of several artificial neural networks and hidden Markov models.

Neural networkHMM
Smean scoreSmean predictionSmax scoreSmax predictionD-scoreD predictionHMM prediction
0.166NO0.632NO0.121NON

TargetP

TargetP 1.1 predicts the subcellular location of eukaryotic proteins. The location assignment is based on
the predicted presence of any of the N-terminal presequences: mitochondrial targeting peptide (mTP)
or secretory pathway signal peptide (SP).

Mitochondrion ScoreSecretory ScoreAny other locationLocalizationReliability classPredicted presenquence length
0.0480.1090.926_10

TMHMM

Prediction of transmembrane helices in proteins

ExpAA=0First60=0PredHel=0
Topology=()

ExpAA: The expected number of amino acids intransmembrane helices.
First60: The expected number of amino acids in transmembrane helices in the first 60 amino acids of the protein.
PredHel: The number of predicted transmembrane helices by N-best.
Topology: The topology predicted by N-best.

Sequence:
>GSTUMT00001321001
MAPSGICISCHEALTIPDEDHPLEPGLVGDVELRCGHHYHWSCFAEEYSA
DGATPATKAQCPTCTHDITTNGKLLVTLRNEGGEQPDTDIGTLLEEEEFY
GRNPEMKEVRAFLEFCAEGDEGEVREMLAATPELVSRQDHETGQTGLHVA
VMNGREEVIRVLFKHNVDRLVTDAAGKTAYQLAVDMGATREQLRMLCDR

EST contigs matching with the Gene:

ContigBest BlastXE-value
SY0AAB59YN04FM1 hypothetical protein MGG_13816 [Magnaporthe grisea 70-15]2e-09


Manual Annotation:

Please find below the necessary files for GSTUMT00001321001 annotation :

link to GSTUMT00001321001 Artemis file
link to scaffold_277 sequence file
link to scaffold_277ESTs