Tuber melanosporum DB

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Contig Name: SY0AAB29YD12FM1
Length(NT) : 625
Best Gene Model Blast : Link to GSTUMT00009008001 E-value : 5e-81
Numbers of ESTs : 1

Blast Results:

Nr Definition: unnamed protein product
Accession: dbj|BAE58923.1| Score: 146 E_value: 5e-15
KEGG Definition: predicted protein
Accession: aor:AO090023000366 Score: 146 E_value: 3e-15
KOG Definition:
Classification: [Posttranslational modification, protein turnover, chaperones].
Kog Number: KOG0111 Score: 128 E_value: 2e-08
PFAM Definition: RRM_1, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have a N terminus rrm which is included in the seed. There is a second region towards the C terminus that has some features of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease..
Pfam Number: pfam00076 Score: 132 E_value: 7e-09
Swissprot: Q9SVM8|GRP2_ARATH

Sequence:
>SY0AAB29YD12FM1
TTGGCTTCAGAACGCTCCGTGAAGTTTTCTTCGCAGAGTACCCTCCCACA
ACAAACAAAACACAAGACCGGTATTTAGAAATATTCCTTTCCTCCCTCCT
TGCTCTATCTTTGCGTGCGTTTTTTAGAAATGGATTTTTCCCCATCTCCT
GTCCGGGGTAGCGCCCAAATTTTTAAGCCTCCCCTCCGTATTAAATCCTG
CGTCCAGTGCTCCATTTCTACTTTCCGCAAATAACAGTCAACACAATGGC
CACCAAACTTTTTATCAGATCCCTCAGTTGGAACACTGACGATGTGAGCC
TCAGAAGAGGGTTCGAACAATTTGGAAACGTTACGGATGCCGTATGTCTT
TTCCTTCCCTCTCTCGCCATCTCCTCCTCCTTTAGCTGACGTTTCTTAGG
TCGTCGTCAAGGATCGCGAAACCGGTAGAAGCCGTGGATTCGGTTTCGTT
ACTTTTGATGACGAAACCTCCGCCAATGCTGCTATCGACGCAATGAACGA
TAACGAGTTCGAGGGCCGTCGCATCGTTGTTGTCGTTGCCGAAGACCGTC
GTGGTGGTGGTGGTGGTGGCGGTGGATATCGCAATGACAGTGGCGGTGGA
TATCGCAACAATGGTGGCGGCGGAG

Sequences in the Contig:

SY0AAB29YD12FM1