Tuber melanosporum DB

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Contig Name: SY0AAB14YD11FM1
Length(NT) : 647
Best Gene Model Blast : Link to GSTUMT00006858001 E-value : 1e-101
Numbers of ESTs : 1

Blast Results:

Nr Definition: hypothetical protein FG00536.1
Accession: ref|XP_380712.1| Score: 304 E_value: 5e-40
KEGG Definition: hypothetical protein
Accession: fgr:FG00536.1 Score: 304 E_value: 3e-40
KOG Definition:
Classification: [General function prediction only].
Kog Number: KOG0114 Score: 260 E_value: 1e-23
PFAM Definition: RRM_1, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have a N terminus rrm which is included in the seed. There is a second region towards the C terminus that has some features of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease..
Pfam Number: pfam00076 Score: 141 E_value: 7e-10
Swissprot: Q8ITY4|PM14_CAEEL

Sequence:
>SY0AAB14YD11FM1
TTGGTCTATCCCATCCTTCGAAGCCTCGTTGTATCGATAAACCCTCCTCC
ATCTCTCCTCGTTCTCCCTCACAAACCACGTTTTTCTAACGCCGCCCATC
TCGTTTCCCATCACCTCTCCCATCGGTAAATATCCAGTGAATACCATTAC
TGCAGCCGAGATATGAATCGGGGTGGTAAACTCGCACCAGAAGTCCAAAG
AGCTCTGTTCGTCAAGAATCTGAGGCACGAAAGAATATGCCCCTCACTGT
CATCTCGGTCATCCGCTTACCGCGTTTGTTTTTAGCTACAACGTATCGTC
CGAGGAACTCTTCGATCTCTTTGGCAAGTTTGGGCCAATCCGCCAAATTC
GTCAAGGCATCGCGAACAACACCAAGGGTACCGCATTCGTCGTGTATGAG
GACGTGATGGATGCGAAGACTGCTTGCGATAAGCTAAATGGTTTCAACTT
TCAGAATCGCTACCTCGTTGGTTTGTTGCCCCCCTCCCTTCTCCCAGACC
ACGCTCTATCATCGCCCCCTTAGCTTGGCGGCGCTGATAAAGATGGGATT
ATCCAGTATTATACCACCAACCGGAGAAAATGGTGCGTTCGGAAAACGAC
CTCGCGAAGCGCCAGGAGAGCTTAGAAAAGCTCAAGAAACAACACGG

Sequences in the Contig:

SY0AAB14YD11FM1