Tuber melanosporum DB

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Contig Name: Contig4589
Length(NT) : 673
Best Gene Model Blast : Link to GSTUMT00000251001 E-value : 1e-123
Numbers of ESTs : 2

Blast Results:

Nr Definition: No Hit Found
KEGG Definition: No Hit Found
KOG Definition:
Classification: [RNA processing and modification, Transcription].
Kog Number: KOG0132 Score: 117 E_value: 4e-07
PFAM Definition: Atrophin-1, Atrophin-1 family. Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity..
Pfam Number: pfam03154 Score: 120 E_value: 2e-07

Sequence:
>Contig4589
TTGGGACTACTACAAATCTTTACGACAGCTCAAATAAACTCCATCATAAC
CTCATCCAAACAGGCTCCTCAGCAAGTTTGCCATCTACGACCAGAAAGTC
ATTGAATAAACGATCAAAGTTAGCCCAGTTAAGTCTTCCATCGGCGCCAC
CTCCACCCTTCGAACATTTTTAAAGGGGAAGCTACATTGGTAAACTAATC
AGTCTTAAATTTTCTGTTGTCCATTTATACTACGAATTACGCCGCTCGCC
GGCCGGGCGATAAGTCCCACCGCGGGGTGAAATAAAGGTGAAATGATTCG
CTGCACGTATTGGGACGAAGAAGGACAATGATTTATCATTGCTTCCTGTA
GCGTATATCATCATATTCGAGGGCGGAGGAATGGGTATATATATACATAT
ACGTATATATACAATCCGAACCTCCACCCGTCCGTCAAACAATAAACCTA
CAATGTCCTTCACGACCCTCCCCCCAGAACTCCACCTGCAAATCGCCTCC
TACCTCCCAACGCCCTCCCTCTCGCACCTCCAACAGACGAACAAATACTA
CCGCAACCTCCTCCTGCCCCTCCTGCACGCGCACGCCCTCCGACCACTCC
CAACCTGCACCTCGCTCCACAACGCAATCGCAGCCCCGCACCCGGGACTC
TTCACCCTCCTCCTCAACCACCT

Sequences in the Contig:

SY0AAC36YC02FM1 SY0AAD60YF16FM1