Tuber melanosporum DB

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Contig Name: Contig3746
Length(NT) : 734
Best Gene Model Blast : Link to GSTUMT00010028001 E-value : 0.0
Numbers of ESTs : 3

Blast Results:

Nr Definition: hypothetical protein CIMG_09202
Accession: ref|XP_001239581.1| Score: 656 E_value: 6e-67
KEGG Definition: spliceosomal protein snRNP-U1A/U2B
Accession: aor:AO090120000314 Score: 642 E_value: 1e-65
KOG Definition:
Classification: [RNA processing and modification].
Kog Number: KOG4206 Score: 399 E_value: 1e-39
PFAM Definition: RRM_1, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have a N terminus rrm which is included in the seed. There is a second region towards the C terminus that has some features of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease..
Pfam Number: pfam00076 Score: 123 E_value: 1e-07
Swissprot: Q9CQI7|RU2B_MOUSE

Sequence:
>Contig3746
TTGGCCAACTTTTTTGTACAAAGTTGTCCCCCGAGAATCACACCTACGGT
AAAGGAACAAATTATGGCATCCCCAACTTCAACTGTGAATACTGGTACTC
CGTCTAGCACAGTCTACATCCGCAACCTAGAAGAATCTGTGAAGATTCCA
TTACTCAAGCAGTCCCTGACAGCCATCTTCTCTCAATATGGAACCATAAT
CGACCTCGTCGCGAAGAAGAACCTGAAAGCCAAAGGACAAGCCTTCGTCG
TCTTTGACAGTCCCCAAGCGGCTGAGCAGGCTATCAAAGAAGTCCAGGCA
TTCCCTCTCTTCGATAAACCTATGGTTCTGGCCTTTGCAAAGTCCCGAAG
CGATGCGACCGTCAAGCGAGAAGCCGGCGAAGACAGCCAGGAGTTTGAGG
CCCACAAGCGCCGGAGGCTTGCAGAGAGGGAACGGAAACAAGCATTGGCA
GCTCTGGAATCCCAGCGTCATGCATCCACCACGGCAGCTCCCCAAGTGGA
TTCTGCGAAGGCTACTAAGAAGTCCGGGGGCCTCAAGTCTACGGCACCTG
CGGCAGCTCCACAAATTCCCGACGAGTATCTTCCACCCAACAGTACGTTG
TTTTTACAAAACCTACCGGACGAGACGGATTCAGATACCCTCACTTCGCT
ATTCGGACGGTTCGATGGGTTCAAGGAGGTGCGTATGGTGCCCGGAAGAA
AGGGTATTGCGTTTGTGGAGTTTGAGCAGCTGGA

Sequences in the Contig:

SY0AAA18YO01FM1 SY0AAC15YF05FM1 SY0AAD29YO20FM1