Tuber melanosporum DB

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Contig Name: Contig1385
Length(NT) : 686
Best Gene Model Blast : Link to GSTUMT00009008001 E-value : 0.0
Numbers of ESTs : 15

Blast Results:

Nr Definition: unnamed protein product
Accession: dbj|BAE58923.1| Score: 252 E_value: 4e-20
KEGG Definition: predicted protein
Accession: aor:AO090023000366 Score: 252 E_value: 2e-20
KOG Definition:
Classification: [General function prediction only].
Kog Number: KOG0149 Score: 200 E_value: 1e-16
PFAM Definition: RRM_1, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have a N terminus rrm which is included in the seed. There is a second region towards the C terminus that has some features of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease..
Pfam Number: pfam00076 Score: 197 E_value: 3e-16
Swissprot: Q9SVM8|GRP2_ARATH

Sequence:
>Contig1385
TTGGCCTCCCTCCCTTCTTCCCCTCTCCTTCCTTTCTTTACTCGCACTCC
CATCCTCCTCTTCAGAACGCTCCGTGAAGTTTTCTTCGCAGAGTACCCTC
CCACAACAAACAAAACACAAGACCGTGCTCCATTTCTACTTTCCGCAAAT
AACAGTCAACACAATGGCCACCAAACTTTTTATCAGATCCCTCAGTTGGA
ACACTGACGATGTGAGCCTCAGAAGAGGGTTCGAACAATTTGGAAACGTT
ACGGATGCCGTCGTCGTCAAGGATCGCGAAACCGGTAGAAGCCGTGGATT
CGGTTTCGTTACTTTTGATGACGAAACCTCCGCCAATGCTGCTATCGACG
CAATGAACGATAACGAGTTCGAGGGCCGTCGCATCGTTGTTGTCGTTGCC
GAAGACCGTCGTGGTGGTGGTGGTGGTGGCGGTGGATATCGCAATGACAG
TGGCGGTGGATATCGCAACAATGGTGGCGGCGGAGGAGGTGCTTGGAGAT
AGGTTGAGGGCTGCTTGAGCGTTGATCATGGGACTTGTTTCTTTTTCTCG
AACCCGTTGCGCTCCGACATCCCCCACTCCTCTGCAACGAACGGATGACT
TGTCTACTTAATGTTTCCATGTCTCCATGTTCTCGTTTTCTAGTTTCTAA
ATAAATGTTCTCGTTTCGGGAATCCTATTTGACCTT

Sequences in the Contig:

SY0AAA49YH23FM1 SY0AAC11YK05FM1 SY0AAC13YD05FM1
SY0AAC34YN03FM1 SY0AAC39YJ17FM1 SY0AAC53YM13FM1
SY0AAD48YE14FM1 SY0AAD51YC01FM1 SY0AAD56YH04FM1
SY0AAD56YJ11FM1 SY0AAD57YG17FM1 SY0AAD60YE17FM1
SY0AAD61YN12FM1 SY0AAD62YL09FM1 SY0AAD63YJ02FM1