Publications (1981-2014)

Research Papers

  1. MARTIN F, CHEMARDIN M, GADAL P (1981) Nitrate assimilation and nitrogen circulation in Austrian pine. Physiologia Plantarum 53, 105-110.
  2. CHEMARDIN M, MAUDINAS B, MARTIN F, GADAL P (1981) Absorption de 15N03- et transport de l’azote chez Alnus glutinosa nodulé et non nodulé. Compte rendu de l’Académie des Sciences, Paris, Série III 293, 409-412.
  3. MARTIN F, MAUDINAS B, CHEMARDIN M, GADAL P (1981) Preparation of submicrogram nitrogen samples for isotope analysis by the GS emission spectrometer. International Journal of Applied Radiation and Isotopes 32, 215-217.
  4. MARTIN F, CHEMARDIN M, GADAL P (1981) Détermination isotopique du 15N par spectrométrie d’émission dans les tissus végétaux. Physiologie Végétale 19, 513-521.
  5. JACQUOT JP, BUCHANAN BB, MARTIN F, VIDAL J (1981) Enzyme regulation in C4 photosynthesis. Purification and properties of thioredoxin-linked NADP-malate dehydrogenase from corn leaves. Plant Physiology 68, 300-304.
  6. MARTIN F, HIREL B, GADAL P (1982) Sur l’activité enzymatique ornithine carbamyl transférase des actinorhizes d‘Alnus glutinosa (L.) Gaertn. Compte Rendu de l’Académie des Sciences, Paris, Série III, 295, 557-559.
  7. MARTIN F, MAUDINAS B, GADAL P (1982) Separation of o-phthaldialdehyde derivatives of free amino acids from plant tissues by isocratic reverse-phase high performance liquid chromatography. Annals of Botany 50, 401-406.
  8. MARTIN F, SUZUKI A, HIREL B (1982) A new high performance liquid chromatography assay for glutamine synthetase and glutamate synthase in plant tissues. Analytical Biochemistry 125, 24-29.
  9. SUZUKI A, JACQUOT JP, MARTIN F, GADAL P (1982) Light-dependent activity of glutamate synthase in vitro. Biochemical and Biophysical Research Communications 106, 65-71.

10.  MARTIN F, MSATEF Y, BOTTON B (1983) Nitrogen assimilation in mycorrhizas. I. Purification and properties of the NADP-specific glutamate dehydrogenase of the ectomycorrhizal fungus Cenococcum graniforme. New Phytologist 93, 415-422.

11.  MARTIN F, WINSPEAR MJ, McFARLANE JD, OAKS A (1983) The effect of methionine sulfoximine on the accumulation of ammonia in C3 and C4 leaves : the relationship between NH3 accumulation and photorespiratory activity. Plant Physiology 71, 177-181.

12.  MARTIN F, BOTTON B, MSATEF Y (1983) Enzyme-linked immunosorbent assay of fungal NADP-glutamate dehydrogenase. Plant Physiology 72, 398-401.

13.  MARTIN F, HIREL B, GADAL P (1983) Purification and properties of ornithine carbamoyl transferase 1 from Alnus glutinosa root nodules. Zeitschrift fur Pflanzenphysiologie, 111, 413-422.

14.  MARTIN F, CANET D, ROLIN D, MARCHAL JP, LARHER F (1983) Phosphorus-31 nuclear magnetic resonance study of polyphosphate metabolism in intact ectomycorrhizal fungi. Plant and Soil 71, 469-476.

15.  HIREL B, NATO A, MARTIN F (1984) Glutamine synthetase in ribulose 1,5-bisphosphate carboxylase/oxygenase deficient tobacco mutants in cell suspension culture. Plant Cell Reports 3, 106-108.

16.  GENETET I, MARTIN F, STEWART GR (1984) Nitrogen assimilation in mycorrhizas. Ammonium assimilation in the N-starved ectomycorrhizal fungus Cenococcum graniforme . Plant Physiology 76, 395-399.

17.  MARTIN F, CANET D, MARCHAL JP (1984) In vivo natural abundance 13C NMR study of the carbohydrate storage in ectomycorrhizal fungi. Physiologie Végétale 22, 733-743.

18.  MARTIN F, CANET D, MARCHAL JP, BRONDEAU J (1984) In vivo natural-abundance 13C nuclear magnetic resonance studies of living ectomycorrhizal fungi. Observation of fatty acids in Cenococcum graniforme and Hebeloma crustuliniforme . Plant Physiology 75, 151-153.

19.  MARTIN F (1985) 15N-NMR studies of nitrogen assimilation and amino acid biosynthesis in the ectomycorrhizal fungus Cenococcum graniforme. FEBS Letters 182, 350-354.

20.  MARTIN F, CANET D, MARCHAL JP (1985) 13C nuclear magnetic resonance study of mannitol cycle and trehalose synthesis during glucose utilization by the ectomycorrhizal ascomycete Cenococcum graniforme. Plant Physiology 77, 499-502.

21.  MARTIN F, MARCHAL JP, TIMINSKA A, CANET D (1985) The metabolism and physical state of polyphosphates in ectomycorrhizal fungi. A 31P nuclear magnetic resonance study. New Phytologist 101, 275-290.

22.  MARTIN F, STEWART G, GENETET I, LE TACON F (1986) Amino acid biosynthesis in beech (Fagus sylvatica L.) ectomycorrhizas. New Phytologist 102, 85-94.

23.  MARTIN F, GENETET I, CANET D (1986) Biosynthesis of amino acid during 13C glucose utilization by the ectomycorrhizal ascomycete Cenococcum graniforme monitored by 13C nuclear magnetic resonance. Physiologie Végétale 24, 209-218.

24.  MARTIN F, BEN DRISS M (1986) 15N nuclear magnetic resonance spectroscopy : a powerful tool to study amino acid biosynthesis in higher plants. In “Fundamental, Ecological and Agricultural Aspects of Nitrogen Metabolism in Higher Plants”, (H. Lambers, J.J. Neeteson et I. Stulen, Eds), Martinus Nijhoff Publishers, pp 191-195.

25.  KHALID A, BOUKROUTE A, BOTTON B, MARTIN F (1988) The aspartate aminotransferase of the ectomycorrhizal fungus Cenococcum geophilum: purification and molecular properties. Plant Physiology Biochemistry 26, 17-28.

26.  AL-ABRAS K, LAPEYRIE F, LE TACON F, MARTIN F (1988) Appréciation de la qualité des systèmes racinaires des plants forestiers par leur état symbiotique. Incidence sur la crise de transplantation de l’Epicéa commun (Picea excelsa (Lam) Link.). Revue Forestière Française XL, 140-148.

27.  MARTIN F, RAMSTEDT M, SODERHALL K (1988) Carbohydrate and amino acid metabolism in the ectomycorrhizal ascomycete Sphaerosporella brunnea during glucose utilization. A 13C NMR study. Plant Physiology 86, 935-940.

28.  BOUDOT D, CANET D, BRONDEAU J, MARTIN F (1988) Quantitation and identification of carbon-13 isotopomers by homonuclear polarization transfer NMR experiments. FEBS Letters 231, 11-15.

29.  HILBERT JL, MARTIN F (1988) Modifications des profils polypeptidiques lors de l’établissement de la symbiose ectomycorhizienne. Cryptogamie, Mycologie 9, 221-231.

30.  HILBERT JL, MARTIN F (1988) Regulation of gene expression in ectomycorrhizas. I. Protein changes and the presence of ectomycorrhiza-specific polypeptides in the Pisolithus- Eucalyptus. New Phytologist 110, 339-346.

31.  AL-ABRAS K, BILGER I, MARTIN F, LE TACON F, LAPEYRIE F (1988) Morphological and physiological changes in ectomycorrhizas of spruce (Picea excelsa (Lam.) Link) associated with ageing. New Phytologist 110, 535-540.

32.  MARTIN F, STEWART G, GENETET I, MOUROT B (1988) The involvement of glutamate dehydrogenase and glutamine synthetase in ammonia assimilation by the rapidly growing ectomycorrhizal ascomycete Cenococcum geophilum Fr.. New Phytologist 110, 541-550.

33.  DELL B, BOTTON B, MARTIN F, LE TACON F (1989) Glutamate dehydrogenases in ectomycorrhizas of spruce [Picea excelsa (Lam.) Link] and beech (Fagus sylvatica L.). New Phytologist 111, 683-692.

34.  GRELLIER B, STRULLU DG, MARTIN F, RENAUDIN S (1989) Synthesis in vitro, microanalysis and 31P NMR study of metachromatic granules in birch mycorrhizas. New Phytologist 112, 49-54.

35.  MARTIN F, BEN DRISS M (1989) Partitioning of assimilated nitrogen in beech (Fagus sylvatica). Annales des Sciences Forestières 46, 660-663.

36.  BILGER I, GUILLOT V, MARTIN F, LE TACON F (1989) Contribution of glycolysis and pentose phosphate pathway in ectomycorrhizas and non-mycorrhizal roots of Picea excelsa Link.. Annales des Sciences Forestières 46, 724-727.

37.  Martin F, Delaruelle C, Hilbert JL (1990) An improved ergosterol assay to estimate the fungal biomass in ectomycorrhizas. Mycological Research, 94, 1059-1064.

38.  Martin F, Zaiou M, Le Tacon F, Rygiewicz P (1991) Strain specific differences in ribosomal DNA from the ectomycorrhizal fungi Laccaria bicolor (Maire) Orton and Laccaria laccata (Scop. ex Fr.) Br.. Annales des Sciences Forestières, 48, 297-305.

39.  STEPIEN V, BRUN A, BOTTON B, Martin F (1991) Corpuscules protéiques dans les cellules de l’écorce de Populus x euramericana. Comptes-Rendu de l’Académie des Sciences, Série III 313, 153-158.

40.  Hilbert JL, COSTA G,  Martin F (1991) Ectomycorrhizin synthesis and polypeptide changes during the early stage of eucalypt mycorrhiza development. Plant Physiology 97, 977-984.

41.  CHALOT M, STEWART G, BRUN A, MARTIN F, BOTTON B (1991) Ammonium assimilation by spruce-Hebeloma sp. ectomycorrhizas. New Phytologist, 119, 541-550.

42.  STEPIEN V, Martin F (1992) Purification, characterization and localization of the bark storage proteins of poplar. Plant Physiology and Biochemistry, 30, 399-407.

43.  BRUN A, CHALOT M, BOTTON B, MARTIN F (1992) Purification and characterization of the NADP-glutamate dehydrogease and glutamine synthetase of the ectomycorhizal basidiomycete Laccaria laccata. Plant Physiology 99, 938-944.

44.  STEPIEN V, J SAUTER, Martin F (1992) Structural and immunological homologies between the storage proteins in the wood and the bark of poplar. Journal of Plant Physiology 140, 247-250.

45.  HENRION B, Martin F (1992) Two-dimensional gel electrophoresis of membrane proteins from ectomycorrhizal fungi. Annales des Sciences Forestières, 49, 309-319.

46.  Henrion B, Le Tacon F, Martin F (1992) Rapid identification of genetic variation of ectomycorrhizal fungi by amplification of ribosomal genes. New Phytologist 122, 289-298.

47.  Tagu D, Python M, Crétin C, Martin F (1993) PCR-assisted differential screening: a method for cloning ectomycorrhiza-regulated cDNAs. The New Phytologist 125, 339-343.

48.  Martin F, Vairelles D, Henrion F (1993) Automated ribosomal DNA fingerprinting by capillary electrophoresis of PCR products. Analytical Biochemistry 214, 182-189

49.  Henrion B, Chevalier G, Martin F (1994) Typing truffle species by PCR amplification of ribosomal DNA. Mycological Research 98, 37-43.

50.  Erland S, Henrion B, Martin F, Glover LA, Alexander IJ (1994) Rapid identification of Tylospora fibrillosa in pure culture and in mycorrhizal association with spruce by RFLPs of the PCR amplified ITS region of ribosomal genes. The New Phytologist 126, 525-532.

51.  Martin F, Rubini P, Côté R, Kottke I (1994) Aluminium polyphosphate complexes in the mycorrhizal basidiomycete Laccaria bicolor: a 27Al NMR study. Planta 194, 241-246.

52.  Henrion B, Di BattistA C, BOUCHARD D, VairelleS D, ThompsoN BD, LE TACON F, MARTIn F (1994) Monitoring the persistence of Laccaria bicolor as an ectomycorrhizal symbiont of nursery-grown Douglas fir by PCR of the rDNA intergenic spacer. Molecular Ecology 3, 571-580

53.  MartiN F, Côté R, Canet D (1994) NH4+ assimilation in the ectomycorrhizal basidiomycete Laccaria bicolor. A 15N-NMR study. New Phytologist 128, 479-485.

54.  Kottke I, Martin F (1994) Demonstration of aluminium in polyphosphate of Laccaria amethystea (Bolt. ex Hooker) Murr. by means of electron energy loss spectroscopy. Journal of Microscopy, 174, 225-232.

55.  BA AM, GARBAYE J, MARTIN F, DEXHEIMER J (1994) Root soluble carbohydrates of Afzelia africana Sm. seedlings and modification of mycorrhiza establishment in response to the excision of cotyledons. Mycorrhiza 4, 269-275.

56.  Burgess T, Laurent P, Dell B, Malajczuk N, Martin F (1995) Effect of the fungal isolate aggressivity on the biosynthesis of symbiosis-related polypeptides in differentiating eucalypt ectomycorrhiza. Planta, 195, 408-417

57.  Tagu D., Martin F. (1995) Expressed sequence tags of randomly selected cDNA clones from Eucalyptus globulus-Pisolithus tinctorius ectomycorrhiza. Molecular Plant Microbe Interactions 8, 781-783.

58.  Lorillou S., Botton, B., Martin F. (1996) Nitrogen source regulates the biosynthesis of NADP-glutamate dehydrogenase in the ectomycorrhizal basidiomycete Laccaria bicolor (Maire) Orton. New Phytol. 132, 289-296.

59.  Buscot F, Wipf D, Di Battista C, Munch JC, Botton B, Martin F (1996) DNA polymorphism in morels: PCR/RFLP analysis of the ribosomal DNA spacers and microsatellite-primed PCR. Mycological Research 100, 63-71.

60.  Tagu D., Nasse, B., Martin F. (1996) Cloning and characterization of hydrophobins-encoding cDNAs from the ectomycorrhizal Basidiomycete Pisolithus tinctorius. Gene 168, 93-97.

61.  Carnero Diaz, M., Martin, F., Tagu, D. (1996) Eucalypt -tubulin: cDNA cloning and increased level of transcripts in ectomycorrhizal root system. Plant Molecular Biology 31, 905-910

62.  Vivin P, Martin F, Guehl JM (1996) Acquisition and within-plant allocation of 13C and 15N in CO2-enriched Quercus robur plants. Physiologia Plantarum 98, 89-96

63.  SELOSSE M-A, COSTA G, DI BATTISTA C, LE TACON F, MARTIN F (1996) Meiotic segregation and recombination of the intergenic spacer of the ribosomal DNA in the ectomycorrhizal basidiomycete Laccaria bicolor. Current Genetics 30, 332-337

64.  Carnero Diaz, M., Martin, F., Tagu, D. (1997) Ribosomal DNA internal transcribed spacers to estimate the proportion of Pisolithus tinctorius and Eucalyptus globulus RNAs in ectomycorrhiza. Applied Environmental Microbiology 63, 840-843

65.  SELOSSE MA, JACQUOT D, BOUCHARD D, MARTIN F, LE TACON F (1998) Temporal persistence and spatial distribution of the ectomycorrhizal basidiomycete Laccaria bicolor in a French forest plantation. Molecular Ecology 7, 561-573

66.  MARTIN F, DELARUELLE C, IVORY M (1998) Genetic variability in intergenic spacers of ribosomal DNA in Pisolithus isolates associated with pine, eucalyptus and Afzelia in Lowland Kenyan forests. New Phytologist 139, 341-352.

67.  MARCAIS B, MARTIN F, DELATOUR C (1998) Structure of Collybia fusipes populations in two infected oak stands. Mycological Research 102, 361-367.

68.  BOIFFIN V, HODGES M, GALVEZ S, BALESTRINI R, BONFANTE P, GADAL P, MARTIN F (1998) Eucalypt NADP-dependent isocitrate dehydrogenase: cDNA cloning and expression in ectomycorrhiza. Plant Physiology 117, 939-948

69.  MARTIN F, BOIFFIN V, PFEFFER P (1998) Carbohydrate and amino acid metabolism in the Eucalyptus globulus–Pisolithus tinctorius ectomycorrhiza during glucose utilization. Plant Physiology 118, 627-635

70.  Nehls U, Béguiristain T, DITENGOU F, Lapeyrie F, Martin F (1998) The expression of a symbiosis-regulated gene in eucalypt roots is regulated by auxins and hypaphorine, the tryptophan betaine of the ectomycorrhizal basidiomycete Pisolithus tinctorius. Planta 207: 296-302

71.  ZELLER B, COLIN-BELGRAND M, DAMBRINE E, MARTIN F (1998) 15N partitioning and production of 15N-labelled litter in beech trees following [15N]urea spray. Ann. Sci. For. 55: 375-383

72.  SELOSSE MA, MARTIN F, LE TACON F (1998) Survival of an introduced ectomycorrhizal Laccaria bicolor strain in a European forest plantation monitored by mitochondrial ribosomal DNA analysis. New Phytologist 140, 753-761

73.  QUENTIN Y VOIBLET C, MARTIN F, FICHANT F (1998) Gene discovery in organisms under-represented in databases. Computers & Chemistry 23, 209-217

74.  SELOSSE MA, MARTIN F, BOUCHARD D, LE TACON F (1999) Structure and dynamics of experimentally introduced and naturally occurring Laccaria spp. discrete genotypes in a Douglas fir plantation. Applied Environmental Microbiology 65, 2006-2014

75.  MARTIN F, SELOSSE MA, LE TACON F (1999). The nuclear ribosomal DNA intergenic spacer of the ectomycorrhizal basidiomycete Laccaria bicolor: structural analysis and allelic polymorphism. Microbiology 145, 1605-1611.

76.  LAURENT P, VOIBLET C, TAGU D, DE CARVALHO D, NEHLS U, DE BELLIS R, BALESTRINI R, BAUW G, BONFANTE P, MARTIN F (1999) A novel class of ectomycorrhiza-regulated cell wall polypeptides in Pisolithus tinctorius. Molecular Plant Microbe Interactions 12, 862-871

77.  GHERBI H, DELARUELLE C, SELOSSE MA, MARTIN F (1999) High genetic diversity in a population of the ectomycorrhizal basidiomycete Laccaria amethystina in a 150-year-old beech forest. Molecular Ecology 8, 2003-2013

78.  SELOSSE MA, BOUCHARD D, MARTIN F, LE TACON F (2000) Effect of Laccaria bicolor strains inoculated on Douglas-fir (Pseudotsuga menziesii) several years after nursery inoculation. Canadian Journal of Forestry 30, 360-371

79.  ZELLER B, COLIN-BELGRAND M, DAMBRINE E, MARTIN F (2000) N release and tree uptake from decomposing litter in a beech forest. Oecologia 123, 550-559

80.  TAGU D, DE BELLIS R, BALESTRINI R, de VRIES O.M.H., PICCOLI G, STOCCHI V, BONFANTE P, MARTIN F. (2000) Immuno-localization of hydrophobin HYDPt-1 from the ectomycorrhizal basidiomycete Pisolithus tinctorius during colonization of Eucalyptus globulus roots. New Phytologist 149, 127-135.

81.  VOIBLET C, DUPLESSIS S, ENCELOT N, MARTIN F (2001) Identification of symbiosis-regulated genes in Eucalyptus globulus-Pisolithus tinctorius ectomycorrhiza by differential hybridization of arrayed cDNAs. Plant Journal 25, 181-192

82.  ZELLER B, COLIN-BELGRAND M, DAMBRINE E, MARTIN F (2001) Fate of nitrogen released from 15N-labelled litter in European beech forests. Tree Physiology 21: 153-162.

83.  SELOSSE MA, MARTIN F, LE TACON F (2001) Intraspecific variation in fruiting phenology in an ectomycorrhizal Laccaria population under Douglas fir. Mycological Research 105: 524-531.

84.  DUPLESSIS S, SORIN C, VOIBLET C, MARTIN F, TAGU D (2001) Cloning and expression analysis of a new hydrophobin cDNA from the ectomycorrhizal basidiomycete Pisolithus. Current Genetics 39: 335-339.

85.  FIORE AM, MARTIN F (2001) Populations of ectomycorrhizal Laccaria amethystina and Xerocomus spp. show contrasting colonization patterns in a mixed forest. New Phytologist 152: 533-542.

86.  DIEZ J, MANJÓN JL, MARTIN F (2001) Molecular phylogeny of the mycorrhizal desert truffles (Terfezia and Tirmania), host specificity and edaphic tolerance. Mycologia 94: 246-258.

87.  MARTIN F, DIEZ J, B DELL, DELARUELLE C (2002) Phylogeography of the ectomycorrhizal Pisolithus species as inferred from nuclear ribosomal DNA ITS sequences. New Phytologist, 153: 345-358.

88.  GELHAYE E, ROUHIER N, LAURENT P, SAUTIERE P, MARTIN F, JACQUOT JP (2002) Isolation and characterization of an extended thioredoxin h from poplar. Physiologia Plantarum 114: 165-171.

89.  TAGU D, MARMEISSE R, BAILLET Y, RIVIERE Y, PALIN B, BERNARDINI F, MEREAU A, GAY G, BALESTRINI R, BONFANTE P, MARTIN F (2002) Hydrophobins in ectomycorrhizas: heterologous transcription of the Pisolithus HydPt-1 gene in yeast and Hebeloma cylindrosporum. European Journal of Histochemistry 46: 23-29.

90.  EL KARKOURI K, MARTIN F, MOUSAIN D (2002) Dominance of the mycorrhizal fungus Rhizopogon rubescens in a plantation of Pinus pinea seedlings inoculated with Suillus collinitus. Annales des Sciences Forestières 59: 197-204.

91.  LACOURT I, DUPLESSIS I, ABBA S, BONFANTE P, MARTIN F (2002) Isolation and characterization of differentially expressed genes in mycelium and fruit body of Tuber borchii. Applied and Environmental Microbiology 68: 4574-4582

92.  JANY JL, GARBAYE J, MARTIN F (2002) Cenococcum geophilum populations show a high degree of genetic diversity in beech forests. New Phytologist 154: 651-659

93.  TAGU D, PALIN B, BALESTRINI R, GELHAYE E, LAPEYRIE F, JACQUOT JP, SAUTIÈRE PE, BONFANTE P, MARTIN F (2003) Characterization of a symbiosis- and auxin-regulated glutathione S-transferase from Eucalyptus globulus roots. Plant Physiology & Biochemistry 41: 611-618.

94.  GELHAYE E, ROUHIER N, VLAMIS-GARDIKAS A, GIRARDET JM, SAUTIERE PE, SAUZET M, MARTIN F, JACQUOT JP (2003) Identification and characterization of a third thioredoxin h in poplar. Plant Physiology & Biochemistry 41: 629-635.

95.  KOHLER A, DELARUELLE C, MARTIN D, ENCELOT N & MARTIN F (2003) The poplar root transcriptome: analysis of 7,000 expressed sequence tags. FEBS Letters 542: 37-41.

96.  PETER M, COURTY PE, KOHLER A, DELARUELLE C, MARTIN D, TAGU D, FREY-KLETT P, DUPLESSIS S, CHALOT M, PODILA G, MARTIN F (2003) Analysis of expressed sequence tags from the ectomycorrhizal basidiomycetes Laccaria bicolor and Pisolithus microcarpus. New Phytologist 159: 117-129

97.  JANY JL, MARTIN F, GARBAYE J (2003) Respiration activity of ectomycorrhizas from Cenococcum geophilum and Lactarius sp. in relation to soil water potential in five beech forests. Plant & Soil 255: 487-494

98.  MOYERSEN B, BEEVER R, MARTIN F (2003) Genetic diversity of Pisolithus in New Zealand indicates multiple long-distance dispersal from Australia. New Phytologist 160, 569-579.

99.  BLAUDEZ D, KOHLER A, MARTIN F, SANDERS D, CHALOT M (2003) Poplar MTP1 confers Zn tolerance and is an oligomeric vacuolar zinc transporter with an essential leucine zipper motif. Plant Cell 15: 2911-2929.

100.ROUHIER N, GELHAYE E, GUALBERTO J, JORDY MN, DE FAŸ E, HIRASAWA M, DUPLESSIS S, LEMAIRE S, FREY P, MARTIN F, MANIERI W, KNAFF D, JACQUOT JP (2004) Poplar peroxiredoxin Q: a thioredoxin-linked chloroplast antioxidant functional in pathogen defense. Plant Physiology 134: 1027-1038.

101.LUIS P, WALTHER G, KELLNER H, MARTIN F, BUSCOT B (2004) Diversity of laccase genes from basidiomycetes in a forest soil. Soil Biology & Biochemistry 36: 1025–1036.

102.KOHLER A, BLAUDEZ D, CHALOT M, MARTIN F (2004) Cloning and expression of multiple metallothioneins from hybrid poplar. New Phytologist 164: 83-94.

103.MURAT C, DIEZ J, LUIS P, DELARUELLE C, DUPRE C, CHEVALIER G, BONFANTE P, MARTIN F (2004) Polymorphism at the ribosomal DNA ITS and its relation to post-glacial re-colonization routes of the Perigord truffle Tuber melanosporum. New Phytologist 164: 401-411.

104.EL KARKOURI K, MARTIN F, MOUSAIN D (2004) Diversity of ectomycorrhizal symbionts in a disturbed Pinus halepensis plantation in the Mediterranean region. Annals of Forest Sciences 61: 705-710.

105.JACOB C, COURBOT M, BRUN A, MARTIN F, CHALOT M (2004) Cellular responses to cadmium in the ectomycorrhizal fungus Paxillus involutus. FEBS Letters 576: 423-427.

106.DUPLESSIS S, COURTY PE, TAGU D, MARTIN F (2005) Transcript patterns associated with ectomycorrhiza development in Eucalyptus globulus and Pisolithus microcarpus. New Phytologist 165: 599-611.

107.TAGU D, BASTIEN C, FAIVRE-RAMPANT P, GARBAYE J, VION P, VILLAR M, MARTIN F (2005) Genetic analysis of phenotypic variation for ectomycorrhiza formation in an interspecific F1 poplar full-sib family. Mycorrhiza 15: 87-91.

108.MOREL M, JACOB C, KOHLER A, JOHANSSON T, MARTIN F, CHALOT M, BRUN M (2005) Identification of differentially-expressed genes in extraradical mycelium versus ectomycorrhizal roots in Paxillus involutus/Betula pendula ectomycorrhizal symbiosis. Applied & Environmental Microbiology 71: 382-391.

109.EL KARKOURI K, MARTIN F, EMMANUEL DOUZERY JP, MOUSAIN D (2005) Diversity of ectomycorrhizal fungi naturally established on containerised Pinus seedlings in nursery conditions. Microbiological Research 160: 47-52

110.LUIS P, KELLNER H, MARTIN F, BUSCOT B (2005) A molecular method to evaluate basidiomycete laccase gene expression in forest soils. Geoderma 128: 18-27.

111.GUPTA P, DUPLESSIS S, WHITE J, MARTIN F, KARNOSKY DF, PODILA GK (2005) Global gene expression patterns of trembling aspen trees following long term exposure to elevated CO2 and tropospheric O3. New Phytologist 167: 129-142.

112.PARDO AG, KEMPPAINEN M, VALDEMOROS D, DUPLESSIS S, MARTIN F, TAGU D. 2005. T-dna transfer from Agrobacterium tumefaciens to the ectomycorrhizal fungus Pisolithus microcarpus. Revista Argentina de Microbiologia 37: 69-72.

113. GABELLA S, ABBA S, DUPLESSIS I, MONTANINI B, MARTIN F, BONFANTE P (2005) Expressed sequence tags and cDNA arrays reveal novel marker genes controlling fruit body formation in Tuber borchii. Eukaryotic Cell 4: 1599-1602.

114.KEMPPAINEN M, CIRCOSTA A, TAGU D, MARTIN F, PARDO AG (2005) Agrobacterium-mediated transformation of the ectomycorrhizal symbiont Laccaria bicolor S238N. Mycorrhiza 16: 19-22.

115.LUIS P, KELLNER H, ZIMDARS B, LANGER U, MARTIN F, BUSCOT B (2005) Patchiness and spatial distribution of laccase genes of ectomycorrhizal, saprotrophic, and unknown Basidiomycetes in the upper horizons of a mixed forest cambisol. Microbial Ecology 50 : 570-579.

116.TUSKAN GA, DIFAZIO S, JANSSON S, BOHLMANN, GRIGORIEV I, HELLSTEN U, PUTNAM N, RALPH S, ROMBAUTS S, SALAMOV A, SCHEIN J, STERCK L, AERTS A, BHALERAO RR, BHALERAO RP, BLAUDEZ D, BOERJAN W, BRUN A, BRUNNE A, BUSOV V, CAMPBELL M, CARLSON J, CHALOT M, CHAPMAN J, CHEN G-L, COOPER D, COUTINHO P, COUTURIER J, COVERT S, CRONK Q, CUNNINGHAM R, DAVIS J, DEGROEVE S, DEJARDIN A, DEPAMPHILIS C, DETTER J, DIRKS B, DUBCHAK I, DUPLESSIS S, EHLTING J, ELLIS B, GENDLER K, GOODSTEIN D, GRIBSKOV M, GRIMWOOD J, GROOVER A, GUNTER L, HAMBERGER B, HEINZE B, HELARIUTTA Y, HENRISSAT B, HOLLIGAN D, HOLT R, HUANG W, ISLAM-FARIDI N, JONES S, JONES-RHOADES M, JORGENSEN R, JOSHI C, KANGASJÄRVI J, KARLSSON J, KELLEHER C, KIRKPATRICK R, KIRST M, KOHLER A, KALLURI U, LARIMER F, LEEBENS-MACK J, LEPLE J, LOCASCIO P, LUO Y, LUCAS S, MARTIN F, MONTANINI B, NAPOLI C, NELSON DR, NELSON C, NIEMINEN K, NILSSON O, PEREDA V, PETER G, PHILIPPE R, PILATE G, POLIAKOV A, RAZUMOVSKAYA J, RICHARDSON P, RINALDI C, RITLAND K, ROUZE P, RYABOY D, SCHMUTZ J, SCHRADER J, SEGERMAN B, SHIN H, SIDDIQUI A, STERKY F, TERRY A, TSAI C, UBERBACHER E, UNNEBERG P, VAHALA J, WALL K, WESSLER S, YANG G, YI T, DOUGLAS C, SANDBERG G, VAN DE PEER Y & ROKHSAR D (2006) The genome of black cottonwood, Populus trichocarpa. Science 313, 1596-1604.

117.PLOMION C, LALANNE C, CLAVEROL S, MEDDOUR H, KOHLER A, BOGEAT-TRIBOULOT MB, BARRE A, LE PROVOST G, DUMAZET H, JACOB D, BASTIEN C, DREYER E, DE DARUVAR A, GUEHL JM, SCHMITTER JM, MARTIN F, BONNEU M (2006) Mapping the proteome of poplar and application to the discovery of drought-stress responsive proteins. Proteomics 6, 6509–6527.

118.MONTANINI B, GABELLA S, ABBA S, PETER M, KOHLER A, BONFANTE P, CHALOT M, MARTIN F, OTTONELLO S (2006) Gene expression profiling of the nitrogen starvation stress response in the mycorrhizal ascomycete Tuber borchii. Fungal Genetics and Biology 43: 630-641.

119.FRETTINGER P, DERORY J, HERRMANN S, PLOMION C, LAPEYRIE F, OELMÜLLER R, MARTIN F, BUSCOT F (2007) Transcriptional changes in two types of pre-mycorrhizal roots and in ectomycorrhizas of oak microcuttings inoculated with Piloderma croceum. Planta 225: 331-340.

120.COUTURIER C, MONTANINI B, MARTIN F, BRUN A, BLAUDEZ D, CHALOT M (2007) The expanded family of ammonium transporters in the perennial poplar plant. New Phytologist 174: 137-150.

121.RINALDI C, KOHLER A, FREY P, DUCHAUSSOY F, NINGRE N, COULOUX A, WINCKER P, LE THIEC D, FLUCH S, MARTIN F, DUPLESSIS S (2007) Transcript profiling of Poplar leaves upon infection with compatible and incompatible strains of the foliar rust Melampsora larici-populina. Plant Physiology 144: 347–366.

122.DEVEAU A, PALIN B, DELARUELLE C, PETER M, KOHLER K, PIERRAT JC, SARNIGUET A, GARBAYE J, MARTIN F, FREY-KLETT P (2007) The mycorrhiza helper Pseudomonas fluorescens BBc6R8 has a specific priming effect on the growth, morphology and gene expression of the ectomycorrhizal fungus Laccaria bicolor S238N. New Phytologist 175, 743-755.

123.MARTIN F, AERTS A, AHREN D, BRUN A, DANCHIN EGJ, DUCHAUSSOY F, GIBON J, KOHLER A, LINDQUIST E, PEREDA V, SALAMOV A, SHAPIRO HJ, WUYTS J, BLAUDEZ D, BUEE M, BROKSTEIN P, CANBÄCK B, COHEN D, COURTY PE, COUTINHO PM, DELARUELLE C, DETTER JC, DEVEAU A, DIFAZIO S, DUPLESSIS S, FRAISSINET-TACHET L, LUCIC E, FREY-KLETT P, FOURREY C, FEUSSNER I, GAY G, GRIMWOOD J, HOEGGER PJ, JAIN P, KILARU S, LABBE J, LIN YC, LEGUE V, LE TACON F, MARMEISSE R, MELAYAH D 1 , MONTANINI B, MURATET M, NEHLS U, NICULITA-HIRZEL H, OUDOT-LE SECQ MP, PETER M, QUESNEVILLE H, RAJASHEKAR B, REICH M, ROUHIER N, SCHMUTZ J, YIN T, CHALOT M, HENRISSAT B, KÜES U, LUCAS S, VAN DE PEER Y, PODILA G, POLLE A, PUKKILA PJ, RICHARDSON PM, ROUZE P, SANDERS IR, STAJICH JE, TUNLID A, TUSKAN G, GRIGORIEV IV (2008) Symbiosis insights from the genome of the mycorrhizal basidiomycete Laccaria bicolor. Nature 452: 88-92.

124.KOHLER A, RINALDI C, DUPLESSIS S, BAUCHER M, GEELEN D, DUCHAUSSOY F, MEYERS BC, BOERJAN W, MARTIN F (2008) Genome-wide identification of NBS resistance genes in Populus trichocarpa. Plant Molecular Biology 66: 619-636.

125.LAMBOU K, THARREAU D, KOHLER A, SIRVEN C, MARGUERETTAZ M, BARBISAN C, SEXTON A, KELLNER EM, MARTIN F, HOWLETT B, ORBACH M, LEBRUN MH (2008) Fungi have three tetraspanin families with distinct functions. BMC Genomics 9: 63.

126.KEMPPAINEN M, DUPLESSIS S, MARTIN F, PARDO A (2008) T-DNA insertion, plasmid rescue and integration analysis in the model mycorrhizal fungus Laccaria bicolor. Microbial Biotechnology 1: 258–269.

127.LABBE J, ZHANG X, YIN T, SCHMUTZ J, GRIMWOOD J, MARTIN F, TUSKAN GA, LE TACON F (2008) A genetic linkage map for the ectomycorrhizal fungus Laccaria bicolor and its alignment to the whole-genome sequence assemblies. New Phytologist 180: 316-328.

128.NICULITA-HIRZEL H, LABBE J, KOHLER A, LE TACON F, MARTIN F, SANDERS IR, KÜES. U (2008) Gene organization of the mating type regions in the ectomycorrhizal fungus Laccaria bicolor reveals distinct evolution between the two mating type loci. New Phytologist 180: 329-342.

129.LUCIC E, FOURREY F, KOHLER A, MARTIN F, CHALOT M, BRUN-JACOB A (2008) A gene repertoire for nitrogen transporters in Laccaria bicolor. New Phytologist 180: 343-364.

130.DEVEAU A, KOHLER A, FREY-KLETT P, MARTIN F (2008) The major pathways of carbohydrate metabolism in the ectomycorrhizal basidiomycete Laccaria bicolor S238N. New Phytologist 180: 379-380.

131.MOREL M, KOHLER A, MARTIN F, GELHAYE E, ROUHIER N (2008) Comparison of the thiol-dependent antioxidant systems in the ectomycorrhizal Laccaria bicolor and the saprotrophic Phanerochaete chrysosporium. New Phytologist 180: 391-407.

132.COURTY PE, POLETTO M, DUCHAUSSOY F, BUÉE M, GARBAYE J, MARTIN F (2008) Gene transcription of Lactarius quietusQuercus petraea ectomycorrhizas in a forest soil. Applied and Environmental Microbiology 74: 6598-6605.

133.BARRET M, FREY-KLETT P, BOUTIN M, GUILLERM-ERCKELBOUDT AY, MARTIN F, GUILLOT L, SARNIGUET A (2009) The plant pathogenic fungus Gaeumannomyces graminis var. tritici improves bacterial growth and triggers early gene regulations in the biocontrol strain Pseudomonas fluorescens Pf29Arp. New Phytologist, 181: 435–447.

134.COURTY PE, HOEGGER PJ, KILARU S, KOHLER A, BUEE M, GARBAYE J, MARTIN F, KÜES U (2009) Phylogenetic analysis, genomic organization, and expression analysis of multi-copper oxidases in the ectomycorrhizal basidiomycete Laccaria bicolor. New Phytologist 182: 736–750.

135.REICH M, GOEBEL C, KOHLER A, BUEE M, MARTIN F, FEUSSNER I, POLLE A (2009) Fatty acid metabolism in the ectomycorrhizal fungus Laccaria bicolor. New Phytologist 182: 950–964.

136.VIALLE A, FEAU N, ALLAIRE M, DIDUKH M, MARTIN F, MONCALVO JM, HAMELIN R. 2009. Evaluation of mitochondrial genes as DNA barcode for Basidiomycota. Molecular Ecology Resources 9: 99–113.

137.KEMPPAINEN M, DUPLESSIS S, MARTIN F, PARDO AJ (2009) RNA silencing in the model mycorrhizal fungus Laccaria bicolor: gene knock-down of nitrate reductase results in inhibition of symbiosis with Populus. Environmental Microbiology 11: 1878–1896.

138.RAJASHEKAR B, KOHLER A, JOHANSSON T, MARTIN F, TUNLID A, AHREN D (2009) Expansion of signal pathways in the ectomycorrhizal fungus Laccaria bicolor – evolution of nucleotide sequences and expression patterns in families of protein kinases and RAS small GTPases. New Phytologist 183: 365–379.

139. SANON KB, & BA AM, DELARUELLE C, & DUPONNOIS R, MARTIN F (2009) Morphological and molecular analyses in Scleroderma species associated with some Caesalpinioid legumes, Dipterocarpaceae and Phyllanthaceae trees in southern Burkina Faso. Mycorrhiza 19: 571–584

140.BUÉE M*, REICH M*, MURAT C, MORIN E, NILSSON RH, UROZ S, MARTIN F (2009) 454 pyrosequencing analysis of soil fungal diversity as affected by forest management. New Phytologist 184: 452–459.

141.REICH M, KOHLER A , MARTIN F, BUÉE B (2009) Development and validation of an oligonucleotide microarray to characterise ectomycorrhizal fungal communities. BMC Microbiology 9: 241.

142.VINCENT D, BALESDENT MH, GIBON J, CLAVEROL S, LAPAILLERIE D, LOMENECH AM, BLAISE F, ROUXEL T, MARTIN F, BONNEU M, AMSELEM J, DOMINGUEZ V, HOWLETT BJ, WINCKER P, JOETS J, LEBRUN MH, PLOMION P (2009) Hunting down fungal secretomes using liquid-phase IEF prior to high resolution 2-DE. Electrophoresis 30: 4118-4136.

143.GUERRA F, DUPLESSIS S., KOHLER A, MARTIN F, TAPIA J, LEBED P, ZAMUDIO F, GONZALEZ E (2009) Gene expression analysis of Populus deltoides roots subjected to copper stress. Environmental and Experimental Botany 67: 335–344.

144.FELTEN J, KOHLER, MORIN, BHALERAO RP, PALME K, MARTIN F, DITENGOU FA, LEGUE V (2009) The ectomycorrhizal fungus laccaria bicolor stimulates lateral root formation in poplar and Arabidopsis through auxin transport and signaling. Plant Physiology 151: 1991-2005.

145.UROZ S, BUEE M, MURAT C, FREY-KLETT P, MARTIN F (2010) Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil. Environmental Microbiology Reports 2: 281–288.

146.MARTIN F, KOHLER A, MURAT C, BALESTRINI R, COUTINHO PM, JAILLON O, MONTANINI B, MORIN E, NOEL B, PERCUDANI R, PORCEL B, RUBINI A, AMICUCCI A, AMSELEM J, ANTHOUARD V, ARCIONI S, ARTIGUENAVE F, AURY JM, BALLARIO P, BOLCHI A, BRENNA A, BRUN A, BUEE M, CANTAREL B, CHEVALIER G, COULOUX A, DA SILVA C, DENOEUD F, SEBASTIEN DUPLESSIS S, STEFANO GHIGNONE S, HILSELBERGER B, IOTTI M, MARÇAIS B, MELLO A, MIRANDA M, PACIONI G, QUESNEVILLE H, RICCIONI C, RUOTOLO R, SPLIVALLO R, STOCCHI V , TISSERANT E, VISCOMI AR, ZAMBONELLI A, ZAMPIERI E, HENRISSAT B, LEBRUN MH, PAOLOCCI F, BONFANTE P, OTTONELLO S, WINCKER P (2010) Périgord Black Truffle genome uncovers evolutionary origins and mechanisms of symbiosis. Nature 464, 1033-1038.

147.STAJICH, J., WILKE, S., AHREN, D., AU, C., BIRREN, B., BORODOVSKY, M., BURNS, C., CANBACK, B., CASSELTON, L., CHENG, C., DENG, J., DIETRICH, F., FARGO, D., FARMAN, M., GATHMAN, A., GOLDBERG, J., GUIGO, R., HOEGGER, P., HOOKER, J., HUGGINS, A., JAMES, T., KAMADA, T., KILARU, S., KODIRA, C., KUES, U., KUPFER, D., KWAN, H., LOMSADZE, A., LI, W., LILLY, W., MA, L., MACKEY, A., MANNING, G., MARTIN, F., MURAGUCHI, H., NATVIG, D., PALMERINI, H., RAMESH, M., REHMEYER, C., ROE, B., SHENOY, N., STANKE, M., TER-HOVHANNISYAN, V., TUNLID, A., VELAGAPUDI, R., VISION, T., ZENG, Q., ZOLAN, M., & PUKKILA, P. (2010). Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus) Proceedings of the National Academy of Sciences 107: 11889-11894.

148.HACQUARD S, DELARUELLE C, LEGUE V, TISSERANT E, KOHLER A, FREY P, MARTIN F, DUPLESSIS S. 2010. Laser capture microdissection of uredinia formed by Melampsora larici-populina revealed a transcriptional switch between biotrophy and sporulation. Molecular Plant Microbe Interactions 23: 1275–1286.

149.LABBE J, MURAT C, MORIN E, LE TACON F, MARTIN F. 2011. Survey and analysis of simple sequence repeats in the Laccaria bicolor genome, with development of microsatellite markers. Current Genetics 57: 75–88.

150.RUBINI A, BELFIORI B, RICCIONI C, TISSERANT E, ARCIONI S, MARTIN F, PAOLOCCI P. 2011. Isolation and characterization of MAT genes in the symbiotic ascomycete Tuber melanosporum. New Phytologist 189, 710-722.

151.RUBINI A, BELFIORI B, RICCIONI C, ARCIONI S, MARTIN F, PAOLOCCI P. 2011 : mating type distribution in a natural plantation and dynamics of strains of different mating types on the roots of nursery-inoculated host plants. New Phytologist 189, 723-735.

152.MONTANINI B, LEVATI E, BOLCHI A, KOHLER A, MORIN E, TISSERANT E, MARTIN F, OTTONELLO S. 2010. Genome-wide search and functional identification of transcription factors in the mycorrhizal fungus Tuber melanosporum. New Phytologist 189, 736-750.

153.CECCAROLI P, BUFFALINI M, SALTARELLI R, BARBIERI E, POLIDORI E, OTTONELLO S, KOHLER A, TISSERANT E, MARTIN F, STOCCHI V. 2011. Genomic profiling of carbohydrate metabolism in the ectomycorrhizal fungus Tuber melanosporum. New Phytologist 189, 751-764.

154.TISSERANT E, DA SILVA C, KOHLER A, MORIN E, WINCKER P, MARTIN F. 2011. Deep RNA sequencing improved the structural annotation of the Tuber melanosporum transcriptome. New Phytologist 189, 883-891.

155.HACQUARD S, VENEAULT-FOURREY C, DELARUELLE C, FREY P, MARTIN F, DUPLESSIS S. 2011. Validation of Melampsora larici-populina reference genes for in planta RT-quantitative PCR expression profiling during time-course infection of poplar leaves. Physiological and Molecular Plant Pathology 75: 106-112.

156.MURAT C, RICCIONI C, BELFIORI B, CICHOCKI N, LABBE, MORIN E, TISSERANT E, RUBINI A, PAOLOCCI F, MARTIN F. 2011. Distribution of microsatellites in the Perigord black truffle genome and identification of new molecular markers. Fungal, Genetics & Biology 48: 592-601

157.BOLCHI A, RUOTOLO R; MARCHINI G, VURRO E, SANITA DI TOPPI L, KOHLER A, TISSERANT E, MARTIN F, OTTONELLO S. 2011. Genome-wide inventory of metal homeostasis-related gene products including a functional phytochelatin synthase in the hypogeous mycorrhizal fungus Tuber melanosporum. Fungal, Genetics & Biology 115.

158. ZAMPIERI E, BALESTRINI R, KOHLER A, ABBÀ S, MARTIN F, BONFANTE P. 2011. The Perigord black truffle responds to cold temperature with an extensive reprogramming of its transcriptional activity. Fungal, Genetics & Biology 115, .

159.LABBE J, JORGE V, KOHLER A, VION P, MARÇAIS B, BASTIEN C, TUSKAN GA, MARTIN F, LE TACON F. 2011. Identification of quantitative trait loci affecting ectomycorrhizal symbiosis in an interspecific F1 poplar cross and differential expression of genes in ectomycorrhizas of the two parents: Populus deltoides and Populus trichocarpa. Tree Genetics and Genomes 7: 617627.

160.GRIGORIEV IV, CULLEN D, HIBBETT D, GOODWIN SB, JEFFRIES TW, KUBICEK CP, KUSKE C, MAGNUSON J, MARTIN F, SPATAFORA J, BAKER S. 2011. Fueling the future with fungal genomics. Mycology 2: 192-209.

161.DUPLESSIS S, HACQUARD S, DELARUELLE C, TISSERANT E, FREY P, MARTIN F, KOHLER A. 2011. Melampsora larici-populina transcript profiling during germination and time-course infection of poplar leaves reveals dynamic expression patterns associated with virulence and biotrophy. Molecular Plant-Microbe Interactions 24: 808–818.

162.DUPLESSIS S, CUOMO CA, LIN Y-C, AERTS A, TISSERANT E, VENEAULT-FOURREY C, JOLY DL, HACQUARD S, AMSELEM J, CANTAREL B, CHIU R, COUTHINHO P, FEAU N, FIELD M, FREY P, GELHAYE E, GOLDBERG J, GRABHERR M, KODIRA C, KOHLER A, KUES U, LINDQUIST EA, LUCAS S, MAGO R, MAUCELI E, MORIN E, MURAT C, PANGILINAN JL, PARK R, PEARSON M, QUESNEVILLE H, ROUHIER N, SAKTHIKUMAR S, SCHMUTZ J, SELLES B, SHAPIRO H, TANGAY P, TUSKAN GA, VAN DE PEER Y, HENRISSAT B, ROUZE P, ELLIS JG, DODDS PN, SCHEIN JE, ZHONG S, HAMELIN RC, GRIGORIEV IV, SZABO LJ, MARTIN F. 2011. Obligate Biotrophy Features Unraveled by the Genomic Analysis of the Rust Fungi, Melampsora larici-populina and Puccinia graminis f. sp. tritici. Proceedings of the National Academy of Sciences USA 108: 9166-9171.

163.PLETT JM, KEMPPAINEN M, KALE SD, KOHLER A, LEGUÉ V, BRUN A, TYLER B, PARDO A, MARTIN F. 2011. A secreted effector protein of Laccaria bicolor is required for symbiosis development. Current Biology 21: 1197-1203 [top 2% of published articles in biology and medicine by Faculty of 1000 (F1000)].

164.LOTH-PEREDA V, ORSINI E, COURTY PE, LOTA F, KOHLER A, DISS L, BLAUDEZ D, CHALOT M, NEHLS U, BUCHER M, MARTIN F. 2011. Structure and expression profile of the phosphate Pht1 transporter gene family in mycorrhizal Populus trichocarpa. Plant Physiology 156:  2141–2154.

165.EASTWOOD DE, FLOUDAS D, BINDER M, MAJCHERCZYK A, SCHNEIDER P, AERTS A, ASIEGBU FO, BAKER SE, BARRY K, BENDIKSBY B, BLUMENTRITT M, COUTINHO PM, CULLEN D, DE VRIES RP, GATHMAN A, GOODELL B,14, HENRISSAT B, IHRMARK K, KAUSERUD H, KOHLER A, LABUTTI K, LAPIDUS A, LAVIN JL, LEE YH, LINDQUIST E, LILLY W, LUCAS S, MORIN E, MURAT C, OGUIZA JA, PARK J, PISABARRO AG, RILEY R, ROSLING A, SALAMOV A, SCHMIDT O, SCHMUTZ J, SKREDE I, STENLID J, WIEBENGA A, XIE X, KUES U*, HIBBETT DS*, HOFFMEISTER D*, HÖGBERG N*, MARTIN F*, GRIGORIEV IV*, WATKINSON SW*. 2011. The plant cell wall decomposing machinery underlies the functional diversity of forest fungi. Science 333: 762-765. (*These authors contributed equally to this work as senior authors).

166.ZUCCARO A, LAHRMANN U, GÜLDENER U, LANGEN G, PFIFFI S, BIEDENKOPF D, WONG P, SAMANS B, GRIMM C, BASIEWICZ M, MURAT C, MARTIN F, KOGEL KE. 2011. Endophytic life strategies decoded by genome and transcriptome analyses of the mutualistic root symbiont Piriformospora indica. PloS Pathogen 7: e1002290.

167.VINCENOT L, NARA K, STHULTZ C, LABBE J, DUBOIS MP, TEDERSOO L, MARTIN F, SELOSSE MA. 2011. Extensive gene flow over Europe and possible speciation over Eurasia in the ectomycorrhizal basidiomycete Laccaria amethystina complex. Molecular Ecology 21: 281-299.

168.HACQUARD S, JOLY DL, LIN YL, TISSERANT E, FEAU N, DELARUELLE D, LEGUE V, KOHLER A, TANGUAY P, PETRE B, FREY P, VAN DE PEER Y, ROUZE P, MARTIN F, HAMELIN RC, DUPLESSIS S. 2011. A comprehensive analysis of genes encoding small secreted proteins identifies candidate effectors in Melampsora larici-populina (poplar leaf rust). Molecular Plant-Microbe Interactions 25: 279–293.

169.VINCENT D, KOHLER A, CLAVEROL S, SOLIER E, JOETS J, GIBON J, LEBRUN MH, PLOMION P, MARTIN F. 2011. The secretome of the free-living mycelium from the ectomycorrhizal basidiomycete Laccaria bicolor. Journal of Proteome Research 11: 157–171.

170.PLETT JM, MARTIN F. 2012. Poplar root exudates contain compounds that induce the expression of MiSSP7 in Laccaria bicolor. Plant Signaling & Behavior 7, 14.

171.TISSERANT E, KOHLER A, DOZOLME-SEDDAS P, BALESTRINI R, BENABDELLAH K, COLARD A, CROLL D, DA SILVA C, GOMEZ SK, KOUL R, FERROL N, FIORILLI V, FORMEY D, FRANKEN P, HELBER N, HIJRI M, LANFRANCO L, LINDQUIST E, LIU Y, MALBREIL M, MORIN E, POULAIN J, SHAPIRO H, VAN TUINEN D, WASCHKE A, AZCÓN-AGUILAR C, BÉCARD G, BONFANTE P, HARRISON MJ, KÜSTER H, LAMMERS P, PASZKOWSKI U, REQUENA N, RENSING SA, ROUX C, SANDERS IR, SHACHAR-HILL Y, TUSKAN G, YOUNG JPW, GIANINAZZI-PEARSON V, MARTIN F. 2011. The transcriptome of the arbuscular mycorrhizal fungus Glomus intraradices (DAOM 197198) reveals functional tradeoffs in an obligate symbiont. New Phytologist 193: 755–769.

172.PLETT JM, GIBON J, KOHLER A, DUFFY K, HOEGGER PJ, VELAGAPUDI R, HAN J, KÜES U, GRIGORIEV IV, MARTIN F. 2012. Phylogenetic, genomic organization and expression analysis of hydrophobin genes in the ectomycorrhizal basidiomycete Laccaria bicolor. Fungal Genetics and Biology 49: 199–209.

173.LOPEZ D, BRONNER G, BRUNEL N, AUGUIN D, BOURGERIE S, BRIGNOLAS F, CARPIN S, TOURNAIRE-ROUX C, MAUREL C, FUMANAL B, MARTIN F, SAKR S, LABEL P, JULIEN JL, GOUSSET-DUPONT A, VENISSE JS. 2012. Insights into Populus XIP aquaporins: evolutionary expansion, protein functionality, and environmental regulation. Journal of Experimental Botany 63: 2217-2230

174.  HORTAL S, TROCHA LK, MURAT C, CHYBICKI IJ, BUEE M, TROJANKIEWICZ M, BURCZYK J, MARTIN F. 2012. Beech roots are simultaneously colonized by multiple genets of the ectomycorrhizal fungus Laccaria amethystina clustered in two genetic groups. Molecular Ecology 21: 2116–2129.

175.OLSON A, AERTS A, ASIEGBU F, BELBAHRI L, BOUZID O, BROBERG A, CANBÄCK B, COUTINHO PM, CULLEN D, DALMAN K, DEFLORIO G, VAN DIEPEN L, DUNAND C, DUPLESSIS S, DURLING M, GONTHIER P, GRIMWOOD J, GUNNAR FOSSDAL C, HANSSON D, HENRISSAT B, HIETALA A, HIMMELSTRAND K, HOFFMEISTER D, HOGBERG N, JAMES T, KARLSSON J, KOHLER A, KÜES U, LEE Y, LIN YC, LIND M, LINDQUIST E, LOMBARD V, LUCAS S, LUNDEN K, MORIN E, MURAT C, PARK R, RAFFAELLO T, ROUZÉ P, SALAMOV A, SCHMUTZ J, SOLHEIM H, STAHLBERG J, VELEZ M, DE VRIES R, WIEBENGA A, WOODWARD S, YAKOVLEV I, GARBELOTTO M, MARTIN* F, GRIGORIEV* I, STENLID* J (2012) Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen. New Phytologist 194: 1001–1013 (*These authors contributed equally to this work as senior authors).

176.FLOUDAS D, BINDER M, RILEY R, BARRY K, BLANCHETTE RA, HENRISSAT B, MARTINEZ AT, OTILLAR R, SPATAFORA JW, YADAV JS, AERTS A, BENOIT I, BOYD A, CARLSON A, COPELAND A, COUTINHO PM, DE VRIES RP, FERREIRA P, FINDLEY K, FOSTER B, GASKELL J, GLOTZER D, GORECKI P, HEITMAN J, HESSE C, HORI C, IGARASHI K, JURGENS JA, KALLEN N, KERSTEN P, KOHLER A, KUES U, KUMAR TKA, KUO A, LABUTTI K, LARRONDO LF, LINDQUIST E, LING A, LOMBARD V, LUCAS S, LUNDELL T, MARTIN R, MCLAUGHLIN DJ, MORGENSTERN I, MORIN E, MURAT C, NAGY LG, NOLAN M, OHM RA, PATYSHAKULIYEVA A, ROKAS A, RUIZ-DUENAS FJ, SABAT G, SALAMOV A, SAMEJIMA M, SCHMUTZ J, SLOT JC, JOHN FS, STENLID J, SUN H, SUN S, SYED K, TSANG A, WIEBENGA A, YOUNG D, PISABARRO A, EASTWOOD DC, MARTIN F, CULLEN D, GRIGORIEV IV, HIBBETT DS (2012) The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Science 336: 1715–1719.

177.LABBE J, MURAT C, MORIN E, TUSKAN GA, LE TACON F, MARTIN F. 2012. Characterization of transposable elements in the ectomycorrhizal fungus Laccaria bicolor. PLoS ONE 7: e40197.

178.DANIELSEN L, THÜRMER A, MEINICKE P, BUEE M, MORIN E, MARTIN F, PILATE G, DANIEL R, POLLE A, REICH M (2012) Fungal soil communities in a young transgenic poplar plantation form a rich reservoir for fungal root communities. Ecology and Evolution 2: 1935–1948.

179.PETRE B, MORIN E, TISSERANT E, HACQUARD S, DA SILVA C, POULAIN J, DELARUELLE C, MARTIN F, ROUHIER N, KOHLER A, DUPLESSIS S. 2012. RNA-Seq of early-infected poplar leaves by the rust pathogen Melampsora larici-populina uncovers PtSultr3;5, a fungal-induced host sulfate transporter. PLoS ONE 7: e44408. doi:10.1371/journal.pone.0044408.

180.BALESTRINI R, SILLO F, KOHLER A, SCHNEIDER G, FACCIO A, TISSERANT E, MARTIN F, BONFANTE P. 2012. Genome-wide analysis of cell wall-related genes in Tuber melanosporum. Current Genetics 58: 165–177.

181.MORIN E, KOHLER A, BAKER S, FOULONGNE-ORIOL M, LOMBARD V, NAGY LG, OHM RA, PATYSHAKULIYEVAH A, BRUN A, AERTS AL, BAILEY AM, BILLETTE C, COUTINHO PM, DEAKIN G, DODDAPANENI H, FLOUDAS D, GRIMWOOD J , HILDÉN K, KÜES U, LABUTTI KM, LAPIDUS A, LINDQUIST EA, LUCAS SM, MURAT C, RILEY RW, SALAMOV AA, SCHMUTZ J, SUBRAMANIAN V, WÖSTEN HAB, XU JP, EASTWOOD DC, FOSTER GD, SONNENBERG ASM, CULLEN D, DE VRIES RP, LUNDELL T, HIBBETT DS, HENRISSAT B, BURTON KS, KERRIGAN RW, CHALLEN MP, GRIGORIEV IV, MARTIN F. 2012. The genome sequence of the Button Mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche. Proceedings of the National Academy of Sciences USA 109: 17501-17506.

182.RIGAL A, YORDANOV YS, PERRONE I, KARLBERG A, TISSERANT E, BELLINI C, BUSOV VB, MARTIN F*, KOHLER A*, BHALERAO R*, LEGUE V* (2012) The AINTEGUMENTA LIKE 1 homeotic transcription factor PtAIL1 controls the formation of adventitious root primordia in Populus. Plant Physiology DOI:10.1104/pp.112.204453 (*These authors contributed equally to this work as senior authors).

183.RUZICKA D, CHAMALA S, BARRIOS-MASIAS FH, MARTIN F, SMITH S, JACKSON LE, BARBAZUK WB, SCHACHTMAN DP (2012) Inside arbuscular mycorrhizal roots–Molecular probes to understand the symbiosis. The Plant Genome, doi: 10.3835/plantgenome2012.06.0007

184.HACQUARD S, TISSERANT E, BRUN A, LEGUE V, MARTIN F, KOHLER A (2013) Laser microdissection and microarray analysis of Tuber melanosporum ectomycorrhizas reveal functional heterogeneity between mantle and Hartig net compartments. Environmental Microbiology, doi:10.1111/1462-2920.12080

185.UROZ S, IOANNIDIS P, LENGELLE J, CEBRON A, MORIN E, BUEE M, MARTIN F (2013) Functional Assays and Metagenomic Analyses Reveals Differences between the Microbial Communities Inhabiting the Soil Horizons of a Norway Spruce Plantation. PLoS ONE 8(2): e55929. doi:10.1371/journal.pone.0055929

186.MOLINIER V, MURAT C, MORIN E, GOLLOTTE A, WIPF D, MARTIN F (2013) First Identification of Polymorphic Microsatellite Markers in the Burgundy Truffle, Tuber aestivum (Tuberacea). Applications in Plant Sciences, 1(2)

187.MURAT C, RUBINI A, RICCIONI C, DE LA VARGA H, AKROUME E, BELFIORI B, GUARAGNO M, LE TACON F, ROBIN C, HALKETT F, MARTIN F, PAOLOCCI F (2013) Fine-scale spatial genetic structure of the black truffle (Tuber melanosporum) investigated with neutral microsatellites and functional mating type genes. New Phytologist, doi: 10.1111/nph.12264

188.TYLER BM, KALE SD, WANG Q, TAO K, CLARK HR, DREWS K, ANTIGNANI V, RUMORE A, HAYES T, PLETT JM, FUDAL I, GU B, CHEN Q, AFFELDT KJ, BERTHIER E, FISCHER GJ, DOU D, SHAN W, KELLER N, MARTIN F, ROUXEL T, LAWRENCE CB (2013) Microbe-independent entry of oomycete RxLR effectors and fungal RxLR-Like effectors into plant and animal cells is specific and reproducible. Molecular Plant Microbe Interactions, 26: 000–000. http://dx.doi.org/10.1094/MPMI-02-13-0051-IA

189.RILEY R, CHARRON P, IDNURM A, FARINELLI L, DALPE Y, MARTIN F, CORRADI N (2013) Extreme diversification of the mating type–high‐mobility group (MATA‐HMG) gene family in a plant‐associated arbuscular mycorrhizal fungus. New Phytologist doi: 10.1111/nph.12462

190.PATYSHAKULIYEVA A, JURAK E, KOHLER A, BAKER A, BATTAGLIA E, DE BRUIJN W, BURTON KS, CHALLEN MP, COUTINHO PM, EASTWOOD DC, GRUBEN BS, MÄKELÄ MR, MARTIN F, NADAL M, VAN DEN BRINK J, WIEBENGA A, ZHOU M, HENRISSAT B, KABEL M, GRUPPEN H, DE VRIES RP (2013) Carbohydrate utilization and metabolism is highly differentiated in Agaricus bisporus. BMC Genomics 4: 663

191.PLETT JM, AMIT KHACHANE A, OUASSOU M, SUNDBERG B, KOHLER A, MARTIN F (2013) Ethylene and jasmonic acid act as negative modulators during mutualistic symbiosis between Laccaria bicolor and Populus roots. New Phytologist doi: 10.1111/nph.12655

192.TISSERANT E, MALBREIL M, KUO A, KOHLER A, SYMEONIDI A, BALESTRINI R, CHARRON P, DUENSING N, FREI DIT FREY N, GIANINAZZI-PEARSON V, GILBERT B, HANDA Y, HERR J, HIJRI M, KOUL R, KAWAGUCHI M, KRAJINSKI F, LAMMERS P, MASCLAUX FG, MURAT C, MORIN E, NDIKUMANA S, PAGNI M, PETITPIERRE D, REQUENA N, ROSIKIEWICZ P, RILEY R, SAITO K, SAN CLEMENTE H, SHAPIRO H, VAN TUINEN D, BECARD G, BONFANTE P, PASZKOWSKI U, SHACHAR-HILL Y, TUSKAN GA, YOUNG JPW, SANDERS IR, HENRISSAT B, RENSING SA, GRIGORIEV IV, CORRADI N, ROUX C, MARTIN F (2013) The genome of an arbuscular mycorrhizal fungus provides insights into the oldest plant symbiosis. Proceedings of the National Academy of Sciences USA 110: 20117-20122  (Recommended as being of special significance in its field by the Faculty of 1000)

193.DEVEAU A, GROSS H, MORIN E, KARPINETS T, UTTURKAR S, MEHNAZ S, MARTIN F, FREY-KLETT P, LABBE J (2013) Genome Sequence of the Mycorrhizal Helper Bacterium Pseudomona fluorescens BBc6R8. Genome Announc. 2(1):e01152-13. doi:10.1128/genomeA.01152-13.

194.TSCHAPLINSKI TJ, PLETT JM, ENGLE NL, DEVEAU A, CUSHMAN KC, MARTIN MZ, DOKTYCZ MJ, TUSKAN GA, BRUN A, KOHLER A, MARTIN F (2014) Populus trichocarpa and Populus deltoides Exhibit Different Metabolomic Responses to Colonization by the Symbiotic fungus Laccaria bicolor. Molecular Plant Microbe Interactions 27: 546-556.

195.BÖDEKER ITM, CLEMMENSEN KE, DE BOER W, MARTIN F, OLSON Å, D LINDAHL B (2014) Ectomycorrhizal Cortinarius species participate in enzymatic oxidation of humus in northern forest ecosystems. New Phytologist 203: 245-56.

196.PLETT JM, DAGUERRE Y, WITTULSKY S, VAYSSIERES A, DEVEAU A, MELTON SJ, KOHLER A, MORRELL-FALVEY J, BRUN A, VENEAULT-FOURREY C, MARTIN F (2014) The Effector MiSSP7 of the Mutualistic Fungus Laccaria bicolor Stabilizes the Populus JAZ6 Protein and Represses JA-responsive Genes. Proceedings of the National Academy of Sciences USA 111: 8299-8304.

197.LEVASSEUR A, LOMASCOLO A, CHABROL O, RUIZ-DUENAS FJ, UZAN E, PIUMI F, KUES U, RAM AFJ, MURAT C, HAON M, BENOIT I, ARFI Y, CHEVRET D, DRULA E, KWON MJ, GOURET P, LESAGE-MEESEN L, LOMBARD V, MARIETTE J, NOIROT C, PARK J, PATYSHAKULIYEVA A, SIGOILLOT JC, WIEBENGA AD, WOSTEN HAB, MARTIN F, COUTINHO PM, DE VRIES RP, MARTINEZ AT, KLOPP C, PONTAROTTI P, HENRISSAT B, RECORD E (2014) The genome of the white-rot fungus Pycnoporus cinnabarinus: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown. BMC Genomics 15: 486

198.  RILEY R, SALAMOV AA, BROWN DW, NAGY LG, FLOUDAS D, HELD BW, LEVASSEUR A, LOMBARD V, MORIN E, OTILLAR R, LINDQUIST EA, SUN H,
 LABUTTI KM, SCHMUTZ J, JABBOUR D, LUO H, BAKER SE, PISABARRO AG,
 WALTON JD, BLANCHETTE RA, HENRISSAT B, MARTIN F, CULLEN D, HIBBETT DS, GRIGORIEV IV (2014) Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi. Proceedings of the National Academy of Sciences USA 111: 8299-8304.

199.  PENDLETON A, SMITH KE, FEAU N, MARTIN F, GRIGORIEV IV, HAMELIN R, NELSON CD, BURLEIGH JG, DAVIS JM (2014) Duplications and losses in gene families of rust pathogens highlight putative effectors. Front. Plant Sci. doi: 10.3389/fpls.2014.00299

200.  NAGY LG, OHM RA, KOVACS GM, FLOUDAS D, RILEY R, GACSER A, SIPICZKI M, DAVIS JM, DOTY SL, DE HOOG GS, LANG BF, SPATAFORA JW, MARTIN F, GRIGORIEV IG, HIBBETT DS (2014) Latent homology and convergent regulatory evolution underlies the repeated emergence of yeasts. Nature Communications, in press, DOI: 10.1038/ncomms5471

201.  MONTANINI B, CHEN PY, MORSELLI M, JAROSZEWICZ A, LOPEZ D, MARTIN F, OTTONELLO S, PELLEGRINI M (2014) The black truffle methylome: non-exhaustive DNA methylation-mediated transposon silencing in a complex fungal genome with massive repeat element content. Genome Biology 15: 411

202.  DEVEAU A, BARRET M, DIEDHIOU AG, LEVEAU J, DE BOER W, MARTIN F, SARNIGUET A, FREY-KLETT P (2014). Pairwise transcriptomic analysis of the interactions between the ectomycorrhizal fungus Laccaria bicolor S238N and three beneficial, neutral and antagonistic soil bacteria. Microbial Ecology, in press.

203.  PLETT J, KOHLER A, KHACHANE A, KENIRY K, PLETT K, MARTIN F, ANDERSON I (2014) The effect of elevated carbon dioxide on the interaction between Eucalyptus grandis and diverse isolates of Pisolithus sp. is associated with a complex shift in the root transcriptome. New Phytologist, in press.

204.  PLETT JM, KOHLER A, MARTIN F (2014) Mycocypins of Laccaria bicolor deployed during mutualistic plant:fungal interactions exhibit nematocidal activity. ISME J, submitted.

 

EDITORIALS, COMMENTARIES & LETTERS TO THE EDITOR

  1. MARTIN F (2001) Frontiers in molecular mycorrhizal research – genes, loci, dots and spins. New Phytologist 150: 499-507.
  2. MARTIN F, TUSKAN GA, DIFAZIO SP, LAMMERS P, NEWCOMBE G, PODILA GK (2004) Symbiotic sequencing for the Populus mesocosm: DOE tackles the genomes of endomycorrhizal Glomus intraradices and ectomycorrhizal Laccaria bicolor. New Phytologist 161: 330-335.
  3. LAMMERS P, TUSKAN GA, DIFAZIO SP, NEWCOMBE G, PODILA GK, MARTIN F (2004) Mycorrhizal Symbionts of Populus to be sequenced by DOE’s Joint Genome Institute. Mycorrhiza 14: 63-64.
  4. STRAUSS S, MARTIN F (2004) Poplar genomics coming of age. New Phytologist 164: 1-4.
  5. MARTIN F, SLATER H (2007) New Phytologist – an evolving host for mycorrhizal research (editorial). New Phytologist 174: 225-228.
  6. MARTIN F, MURAT C (2008) Sex and truffles: first evidence of Perigord black truffle outcrosses. New Phytologist 180: 260-263.
  7. MARTIN F (2008) Orchestrating morphogenesis in mycorrhizal symbioses (editorial). New Phytologist 177: 839-841.
  8. MARTIN F, GIANINAZZI-PEARSON V, HIJRI M, LAMMERS P, REQUENA N, SANDERS IR, SHACHAR-HILL Y, SHAPIRO H, TUSKAN G.A, YOUNG JPW (2008) The long hard road to a completed Glomus intraradices genome. New Phytologist 180: 747-750.
  9. MARTIN NF & MARTIN F (2010) From Galactic archeology to soil metagenomics – surfing on massive data streams (editorial). New Phytologist 185: 343–347.

10.  MARTIN F (2010) Prof. Dr. Gopi Krishna Podila, 1957-2010 (Obituary) New Phytologist 186: 296-297.

11.  MARTIN F (2010) Parlez-vous effectors? (editorial). New Phytologist 187: 877–879.

12.  MARTIN F (2011) Unearthing the truffle genome (editorial). New Phytologist 187: 877–879.

13.  MARTIN F, CULLEN D, HIBBETT D, PISABARRO A, SPATAFORA JW, BAKER SE, GRIGORIEV IV (2011) Sequencing the Fungal Tree of Life. New Phytologist 190: 818–821.

14.  SELOSSE MA & MARTIN F (2013) Mycorrhizas and New Phytologist: une vraie histoire d’amour. New Phytologist 200: 587–589.

Review papers

  1. MARTIN F (1985) Monitoring of plant metabolism by 13C, 15N and 14N nuclear magnetic resonance spectroscopy. A review of the applications to algae, fungi and higher plants. Physiologie Végétale 23, 463-490.
  2. MARTIN F, RAMSTEDT M, SODERHALL K (1987) Carbon and nitrogen metabolism in ectomycorrhizal fungi and ectomycorrhizas. Biochimie 69, 569-581.
  3. Martin F, Hilbert JL (1991) Morphological, biochemical and molecular changes during ectomycorrhiza development. Experientia, 47, 321-330.
  4. Stépien V, Sauter JJ, Martin F (1994) Vegetative storage proteins in woody plants. Plant Physiology and Biochemistry, 32, 185-192.
  5. DAMBRINE E, MARTIN F, CARISEY N, GRANIER A, HÄLLGREN J-E, BISHOP K (1994) Xylem sap composition: a tool for investigating mineral uptake and cycling in adult spruce. Plant and Soil 168-169, 233-241.
  6. MARTIN F, Laurent P, de Carvalho D., Burgess T., murphy P, Nehls U, TAGU D (1995) Fungal gene expression during ectomycorrhiza formation. Canadian Journal of Botany 73, S541-S547
  7. TAGU D, MARTIN F (1996) Molecular analysis of cell wall proteins expressed during the early steps of ectomycorrhiza development. New Phytologist 133, 73-85
  8. TAGU D, KOTTKE, MARTIN F (1998) Hydrophobins in ectomycorrhizal symbiosis: Hypothesis. Symbiosis 25, 5-18.
  9. PLASSARD C, CHALOT M, BOTTON B, MARTIN F (1997) Le rôle des ectomycorhizes dans la nutrition azotée des arbres forestiers. Revue Forestière Française XLIX, n° sp. « Champignons et Mycorhizes en Forêt », pp. 82-98.
  10. Martin F, Selosse M-A, Di Battista C, Gherbi H, Martin D, Delaruelle C, Vairelles D, Bouchard D, Le Tacon F. (1998) Molecular markers in ecology of ectomycorrhizal fungi. Genetics Selection Evolution 30, S333-S355.
  11. MARTIN F, LAURENT P, DE CARVALHO D, VOIBLET C, BALESTRINI R, BONFANTE P, TAGU D (1999) Cell wall Proteins of the ectomycorrhizal basidiomycete Pisolithus tinctorius: Identification, function, and expression in symbiosis. Fungal Genetics & Biology 27, 161-174
  12. MARTIN F, DUPLESSIS S, DITENGOU F, LAGRANGE H, VOIBLET C, LAPEYRIE F (2001) Developmental Cross Talking in the Ectomycorrhizal Symbiosis: Signals and Communication Genes. New Phytologist 151: 145-154.
  13. MARTIN F, SELOSSE MA, LE TACON F (2001) La symbiose ectomycorhizienne : une interaction durable entre arbres et champignons. Compte Rendus de l’Académie d’Agriculture de France 87 : 101-107.
  14. TAGU D, LAPEYRIE F, MARTIN F (2002) The ectomycorrhizal symbiosis: genetics and developement. Plant & Soil 244: 97-105.
  15. MARTIN F, KOHLER A, DUPLESSIS S (2007) Living in harmony in the wood underground: ectomycorrhizal genomics. Current Opinion in Plant Biology 10: 204-210.
  16. MARTIN F, SELOSSE MA (2008) The Laccaria Genome: A Symbiont Blueprint Decoded. New Phytologist 180: 379-390.
  17. MARTIN F & NEHLS U (2009) Harnessing ectomycorrhizal genomics for ecological insights. Current Opinion in Plant Biology 12: 1–8.
  18. PLETT JM, MARTIN F (2011) Blurred boundaries: lifestyle lessons from ectomycorrhizal fungal genomes. Trends in Genetics 27, 14-22.

19.  KUES U & MARTIN F (2011) On the road to understanding truffles in the underground. Fungal Genetics & Biology 115.

20.  VENEAULT-FOURREY C, MARTIN F (2011) Mutualistic interactions on a knife-edge between saprotrophy and pathogenesis. Current Opinion in Plant Biology 14: 444–450.

21.  JOHNSON D, MARTIN F, CAIRNEY JWG, ANDERSON IC (2011) Tansley Review – The importance of individuals: intraspecific diversity of mycorrhizal plants and fungi in ecosystems. New Phytologist 194: 614–628.

22.  SUKUMAR P, LEGUÉ V, VAYSSIÈRES A, MARTIN F, TUSKAN GA, KALLURI UC (2013) Involvement of auxin pathways in modulating root architecture during beneficial plant-microorganism interactions. Plant & Cell Environment 36: 909–919.

23.  GUGERLI F, BRANDL R, CASTAGNEYROL B, FRANC A, JACTEL H, KOELEWIJN HP, MARTIN F, PETER M, PRITSCH K, SCHRÖDER H, SMULDERS MJM, KREMER A, ZIEGENHAGEN B (2013) Community genetics in the time of next-generation molecular technologies. Molecular Ecology 22: 3198-3207.

24.  KUO A, KOHLER A, MARTIN FM, GRIGORIEV IV (2014) Expanding Genomics of Mycorrhizal Symbiosis. Frontiers in Microbiology, Microbial Symbioses, in press.

Book Chapters

  1. MARTIN F (1991) Nuclear magnetic resonance studies in ectomycorrhizal fungi. In: “Methods in MicrobiologyExperiments with Mycorrhiza”, (JR Norris, D Read, AK Vaema, eds), Volume 23, pp 121-148, Academic Press, London.
  2. Martin F, Chalot M, Brun A, Lorillou S, Botton B, Dell B (1992) Spatial distribution of nitrogen assimilation pathways in ectomycorrhizas. In: “Mycorrhizas in Ecosystems”, (D Read, D Lewis, A Fitter, I Alexander, eds), pp 311-315, C.A.B. International, Wallingford.
  3. MARTIN F, BOTTON B (1993) Nitrogen metabolism of ectomycorrhizal fungi and ectomycorrhizas. Advances in Plant Pathology 9, 83-102, Academic Press.
  4. Martin F, Tommerup I, Tagu D (1993) Genetics of ectomycorrhizal fungi: Progress and Prospects. In: “Management of Mycorrhizas in Agriculture, Horticulture and Forestry”. Plant and Soil 159, 159-170 .
  5. MARTIN F, Tagu D (1995) Ectomycorrhiza Development: A Molecular Perspective. In: Mycorrhiza: Structure, Function, Molecular Biology and Biotechnology, Varma A. K., Hock B., eds, Springer-Verlag Berlin Heidelberg, pp. 29-58
  6. Martin F, Burgess, T., Carnero Diaz, M. E., De Carvalho, D., Laurent, P., Murphy, P., Nehls, U., Tagu, D. (1995) Ectomycorrhiza morphogenesis: insights from studies of developmentally-regulated genes and proteins. In: Biotechnology of ectomycorrhizæ: molecular approaches, V. Stocchi, P. Bonfante, M. Nuti, eds Plenum Press, pp. 53-65.
  7. Nehls, U., Martin, F. (1995) Changes in root gene expression in ectomycorrhiza.  In: Biotechnology of ectomycorrhizæ: molecular approaches, V. Stocchi, P. Bonfante, M. Nuti, eds Plenum Press, pp. 125-138.
  8. Gandeboeuf D, Henrion D, Dupré C, Drevet P, Nicolas P, Chevalier G, Martin F (1995) Molecular identification of Tuber species and isolates by PCR-based techniques. In: Biotechnology of ectomycorrhizæ: molecular approaches, V. Stocchi, P. Bonfante, M. Nuti, eds Plenum Press, pp. 151-160.
  9. Hampp R, Schaeffer C, Wallenda T, Wingler A, Johan P, Laurent P, Martin F, Gadal P (1995) Root carbon metabolism and anaplerosis in ectomycorrhizal trees. In: Eurosilva: Contribution to Forest Tree Physiology, H. Sandermann, M Bonnet-Masimbert, eds INRA Editions, Paris, pp. 233-253.
  10. Tagu D, Simoneau P, Martin F (1995) Molecular analysis of ectomycorrhiza differentiation. In: Eurosilva: Contribution to Forest Tree Physiology, H. Sandermann, M Bonnet-Masimbert, eds INRA Editions, Paris, pp. 195-214.
  11. Tagu D, Martin F (1995) Marqueurs moléculaires de la différenciation de l’ectomycorhize d’Eucalyptus. In: La Symbiose mycorhizienne. Etat des connaissances,  J-A Fortin, C Charest, Y Piché, eds Orbis Publishing, Québec, pp. 35-50.
  12. Martin F, Laurent, P., De Carvalho, D., Burgess, T, Murphy, P., Nehls, U., Tagu, D. (1995) Fungal gene expression during ectomycorrhiza formation. Can. J. Bot. 73(Suppl.1): S541-S547.
  13. Martin F, Plassard C (1997) Assimilation de l’azote par les symbioses ectomycorhiziennes. In: Assimilation de l’azote chez les plantes : aspects physiologique, biochimique et moléculaire, JF Morot-Gaudry, eds, INRA Editions, pp. 179-193.
  14. DELEENS E, MOROT-GAUDRY JF, Martin F, THOREUX A, GOJON A (1997) Méthodologie 15N. In: Assimilation de l’azote chez les plantes : aspects physiologique, biochimique et moléculaire (JF Morot-Gaudry, eds), INRA Editions, pp. 265-280.
  15. Martin F, Lorillou S (1997) Nitrogen acquisition and assimilation in ectomycorrhizal systems. In: TREES – Contributions to Modern Tree Physiology (H. Rennenberg, W. Eschrich, H. Ziegler, eds), SPB Academic Publ., The Hague, pp. 423-439.
  16. Martin F, Lapeyrie F, Tagu D (1997) Altered Gene Expression during Ectomycorrhiza Development. In: The Mycota. Vol. VI. Plant Relationships (P Lemke, G Caroll, eds), Springer Verlag, 223-242.
  17. MARTIN F, VOIBLET C (1998) Large-scale sequencing of anonymous ectomycorrhiza cDNA clones. In: Mycorrhiza manual (A Varma, B Hock, eds), Springer Lab Manual, 475-493
  18. MARTIN F, COSTA G, Delaruelle C, DIEZ J (1998) Genomic Fingerprinting of Ectomycorrhizal Fungi by Microsatellite-primed PCR. In: Mycorrhiza manual (A Varma, B Hock, eds), Springer Lab Manual, 463-474
  19. LE TACON F, DI BATTISTA C, SELOSSE MA, MARTIN F (1998) Molecular diversity studies on mycorrhizal associations in trees. In: Recent Advances in Biotechnology for Tree Conservation and management, International Foundation for Science, Florianopolis, Brazil, 15-19 September 1997, pp 290-300
  20. MARTIN F, TAGU D (1999) Developmental biology of a plant-fungus symbiosis: the ectomycorrhiza. In: Mycorrhiza: Structure, Function, Molecular Biology and Biotechnology (2nd edition) (AK Varma, B Hock, eds), Springer-Verlag Berlin Heidelberg, pp. 51-73
  21. TAGU D, LAPEYRIE F, DITENGOU F, LAGRANGE H, LAURENT P, MISSOUM N, NEHLS U, MARTIN F (2000) Molecular aspects of ectomycorrhiza development. In : Current Advances in Mycorrhizae Research (GK Podila, DD Douds, eds), APS Press, St Paul, Minnesota, pp. 69-89.
  22. VOIBLET C, MARTIN F (2000) Identifying symbiosis-regulated genes in Eucalyptus globulus-Pisolithus tinctorius ectomycorrhiza using suppression subtractive hybridization and cDNA arrays. In: Biology of Plant-Microbe Interactions (PGM de Wit, T Bisseling, W Stiekema, eds),  International Society for Molecular Plant-Microbe Interactions, St Paul, Minnesota, pp. 208-213.
  23. RANGEL-CASTRO JI, DANELL E, BOROWICZ J, MARTIN F (2000) Cantharellus cibarius: carbon and amino acid metabolism in relation to its fruit-body inhabiting fluorescent Pseudomonas. In : Science and Cultivating of Edible Fungi (LJLD Van Griensven, ed), AA Balkema, Rotterdam, pp 87-93.
  24. MARTIN F, CLIQUET JB, STEWART G (2001) Nitrogen acquisition and assimilation in mycorrhizal symbioses. In: The Assimilation of Nitrogen by Plants (P Lea, JF Morot-Gaudry, eds), Springer-Verlag Berlin Heidelberg, pp. 147-166.
  25. MARTIN F, PLASSARD C (2001) Nitrogen assimilation by ectomycorrhizal symbiosis. In: Nitrogen Assimilation by Plants. Physiological, Biochemical and Molecular Aspects. (JF Morot-Gaudry, ed), Science Publishers, Inc. Enfield, NH, USA, pp. 169-184.
  26. MARTIN F,  PEROTTO S, BONFANTE P (2001) Mycorrhizal fungi: a fungal community at the interface between soil and roots. In: The Rhizosphere: Biochemistry and Organic Substances at the Soil-Plant Interface (R Pinton, ZVaranini, P Nannipieri, edts), pp. 263-296.
  27. DI BATTISTA C, GANDEBOEUF D, DUPRE C, BARDET MC, CHEVALIER G, MARTIN F (2001) Identification of the black truffle, Tuber melanosporum, in ectomycorrhizal roots of nursery seedlings by PCR-based assays. In: Actes du Ve Congrès International ‘Science et Culture de la Truffe’, pp. 60-63.
  28. DOUET JP, GANDEBOEUF D, DI BATTISTA C, BARDET MC, MARTIN F, MEDINA B, CHEVALIER G, CASTROVIEJO M (2001) Extraction et purification d’ADN à partir de 100 mg de radicelles mycorhizées : mise en évidence de Tuber melanosporum. In: Actes du Ve Congrès International ‘Science et Culture de la Truffe’, pp. 66-69.
  29. DUPLESSIS S, TAGU D, MARTIN F (2002) Living Together Underground: a Molecular Glimpse of the Ectomycorrhizal Symbiosis. In : Molecular Biology of Fungal Development (H Osiewacz, edts), Mycology Series, Dekker & Dekker, New York, pp. 297-323.
  30. MARTIN F, DUPLESSIS S, DITENGOU F, LAGRANGE H, VOIBLET C, LAPEYRIE F (2001) Rhizospheric signals and early molecular events in the ectomycorrhizal symbiosis. In : Plant Signal Transduction: Frontiers in Molecular Biology (D. Scheel & C. Wasternanck, edts), pp. 272-288
  31. MARTIN F, DUPLESSIS S, KOHLER A & TAGU D (2004) Exploring the transcriptome of the ectomycorrhizal symbiosis. In: Molecular Genetics and Breeding of Forest Trees (Kumar S, Fladung M), Haworth’s Food Products Press, New York, pp. 81-109.
  32. KOHLER A, MARTINA P., DUPLESSIS S, MARTIN F. (2006) Microbial growth and visualisation of bacteria and fungi. In: Handbook of Methods Used in Rhizosphere Research, Luster, J, Finlay, RD, eds, Swiss Federal Research Institute WSL, Birmensdorf, pp 399-400.
  33. PETER M, KOHLER A, DUPLESSIS S, MARTIN F (2006) Identification of single species and communities: RNA extraction from ectomycorrhizas. In Hanbook of methods used in Rhizosphere Research, Luster J, Finlay RD (eds), Swiss Federal Research Institute WSL, Birmendorf, Switzerland. pp457-459
  34. PETER M, KOHLER A, DUPLESSIS S, MARTIN F (2006) Gene expression of single species and communities: Large-scale analysis of gene expression in ectomycorrhizas. In Hanbook of methods used in Rhizosphere Research, Luster J, Finlay RD (eds), Swiss Federal Research Institute WSL, Birmendorf, Switzerland. pp482-483
  35. MARTIN F, PEROTTO S, BONFANTE P (2007) Mycorrhizal fungi: a fungal community at the interface between soil and roots. In: The Rhizosphere: Biochemistry and Organic Substances at the Soil-Plant Interface (R Pinton, ZVaranini, P Nannipieri, edts), pp. 201-235 (2nd edition).
  36. MARTIN F (2007) Fair trade in the underworld: the ectomycorrhizal symbiosis. Biology of the Fungal Cell, 2nd Edition, The Mycota, Vol. VIII, R.J. Howard and N.A.R. Gow (Eds.), Springer-Verlag Berlin Heidelberg,  pp. 291-308.
  37. MARTIN F, TUNLID A (2008) The Ectomycorrhizal Symbiosis: a Marriage of Convenience. In: The Mycota Vol. V “Plant Relationships” 2nd ed, pp. 237-257.
  38. DUPLESSIS S, MAJOR I, MARTIN F, SÉGUIN A (2010) Poplar and pathogen interactions: Insights from Populus genome-wide analysis of resistance and defense gene families and gene expression profiling. In Critical Review in Plant Sciences 28: 309-334.
  39. NEWCOMBE G, MARTIN F, KOHLER A, (2010) Defense and nutrient mutualisms in Populus. In: Genetics and Genomics of Populus (Jansson S, Bhalerao RP, Groover AT, eds), Springer Series, Plant Genetics and Genomics, 8: 247-277.
  40. BUEE M, DE BOER W., MARTIN F., VAN OVERBEEK L., JURKEVITCH E. (2009) The rhizosphere zoo: An overview of plant-associated communities of microorganisms, including phages, bacteria, archaea, and fungi , and of some of their structuring factors. Plant Soil 321: 189–212.
  41. FELTEN J, MARTIN F, LEGUE V (2012) Signalling in ectomycorrhizal symbiosis. In: Signalling and Communication in Plant Symbiosis (edts, S Perotto & F Baluska), Springer-Verlag Book series, 10, 123-142.
  42. PLETT JM, MONTANINI B, KOHLER A, OTTONELLO S, MARTIN F (2011) Tapping Genomics for Unraveling the Ectomycorrhizal Symbiosis. In: Fungal Genomics: Methods and Protocols, (edts, JR XU & BH BLUHM), Methods in Molecular Biology, Springer-Humana Press, p. 249-281.
  43. PLETT JM, MARTIN F (2012) Molecular Interactions in Mycorrhizal Development. In: Biocomplexity of Plant-Fungal Interactions (D Southworth, edt), Wiley-Blackwell Press, p. 29-58.
  44. PLETT JM, MARTIN F (2012) Mutualistic Effectors: Architects of Symbiosis. In: Effectors in Plant-Microbe Interactions, (MARTIN F, KAMOUN S, edts). Wiley-Blackwell Press, p. 295-326.
  45. DEVEAU A, PLETT JM, LEGUE V, FREY-KLETT P, MARTIN F (2012) Communication Between Plant, Ectomycorrhizal Fungi and Helper Bacteria. Witzany G (Ed.), Springer, p.
  46. PLETT JM, KOHLER A, MARTIN F (2013) De-Constructing a Mutualist: How the Molecular Blueprints of Model Symbiotic Fungi Are Changing Our Understanding of Mutualism. In: Fungal Associations, 2nd Edition, The Mycota IX, B. Hock (Ed.), Springer-Verlag Berlin Heidelberg 2013
  47. MARTIN F, BONITO G (2013) Ten Years of Genomics for Ectomycorrhizal Fungi: What Have We Achieved and Where Are We Heading? In: Edible Ectomycorrhizal Mushrooms (Zambonelli A & Bonito B, Ed.), Soil Biology Series, Springer-Verlag Berlin Heidelberg.
  48. VENEAULT-FOURREY C, MARTIN F (2013) New Insights into Ectomycorrhizal Symbiosis Evolution and Function. In Agricultural Applications, 2nd edition, The Mycota XI, F Kempken (Ed.) in press.
  49. VENEAULT-FOURREY C, PLETT JM, MARTIN F (2013) Who is controlling whom within ectomycorrhiza symbiosis: insights from genomic and functional analyses. Molecular Microbial Ecology of The Rhizosphere, Vol I & II, de Bruijn FJ (Ed.), Wiley Blackwell, in press.
  50. TUNLID A, RINEAU F, SMITS M, SHAH F, NICOLAS C, JOHANSSON T, PERSSON P, MARTIN F (2013) Genomics and Spectroscopy Provide Novel Insights into the Mechanisms of Litter Decomposition and Nitrogen Assimilation by Ectomycorrhizal Fungi. Genomics of Soil-and Plant-Associated Fungi, Springer Berlin Heidelberg, pp. 191-211
  51. MARTIN F, KOHLER A (2014) The Mycorrhizal Symbiosis Genomics. In ‘The Ecological Genomics of Fungi’ (Edited by Francis Martin) John Wiley & Sons, Inc, pp. 169-189.
  52. MARTIN F (2014) Fungal–plant interactions: a never ending story of friends and foes. In ‘Genomics of Plant-Related Fungi’ (Edited by Francis Martin), Advances in Botanical Research, n°70, Elsevier-Academic Press, pp. 13-15.

 

oois

  1. DREYER E, AUSSENAC G, Bonnet-Masimbert M., Dizengremel P., Favre J.P., Garrec J.P., LE TACON F, MARTIN F (1989) Forest Tree Physiology (Symposium International sur la Physiologie des Arbres Forestiers, Nancy, 25-30 Septembre), Annales des Sciences Forestières 46 suppl., Elsevier/INRA.
  2. MARTIN F, KAMOUN S (2012) Effectors in Plant-Microbe Interactions. Wiley-Blackwell Press, pp. 426.
  3. MARTIN F (2013) The Ecological Genomics of Fungi. John Wiley & Sons, Inc.
  4. MARTIN F (2014) Genomics of Plant-Related Fungi. Advances in Botanical Research. Elsevier-Academic Press, 70, pp 472

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