Tuber melanosporum DB

You are here: MycorWeb Genome resources Tuber melanosporum DB EST & Gene Sequences Gene card

Gene Name: GSTUMT00003168001
Length(AA) : 237
Localization : scaffold_162
Number of EST contigs matching the gene: 3
Number of ESTs : 49
  User annotation : No user annotation

Blast Results:

Nr Definition: Cu Zn superoxide dismutase
Specie: [Penicillium marneffei]
Accession: gb|ABD67502.1| Score: 684 E_value: 3e-70
KEGG Definition: hypothetical protein
Accession: ang:An07g03770 Score: 673 E_value: 3e-69
KOG Definition: Cu2+/Zn2+ superoxide dismutase SOD1
Classification: [Inorganic ion transport and metabolism].
Kog Number: KOG0441 Score: 543 E_value: 2e-56
PFAM Definition: Sod_Cu, Copper/zinc superoxide dismutase (SODC). superoxide dismutases (SODs) catalyse the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene cause familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Structure is an eight-stranded beta sandwich, similar to the immunoglobulin fold..
Pfam Number: pfam00080 Score: 598 E_value: 9e-63
Swissprot: P83684|SODC_HUMLT


SignalP 3.0 predicts the presence and location of signal peptide cleavage sites in amino acid sequences.
The method incorporates a prediction of cleavage sites and a signal peptide/non-signal peptide prediction
based on a combination of several artificial neural networks and hidden Markov models.

Neural networkHMM
Smean scoreSmean predictionSmax scoreSmax predictionD-scoreD predictionHMM prediction


TargetP 1.1 predicts the subcellular location of eukaryotic proteins. The location assignment is based on
the predicted presence of any of the N-terminal presequences: mitochondrial targeting peptide (mTP)
or secretory pathway signal peptide (SP).

Mitochondrion ScoreSecretory ScoreAny other locationLocalizationReliability classPredicted presenquence length


Prediction of transmembrane helices in proteins


ExpAA: The expected number of amino acids intransmembrane helices.
First60: The expected number of amino acids in transmembrane helices in the first 60 amino acids of the protein.
PredHel: The number of predicted transmembrane helices by N-best.
Topology: The topology predicted by N-best.


EST contigs matching with the Gene:

ContigBest BlastXE-value
Contig4762 Cu Zn superoxide dismutase [Penicillium marneffei]4e-68
Contig6035 Cu Zn superoxide dismutase [Penicillium marneffei]4e-70
SY0AAC47YB12FM1 No hit found

Manual Annotation:

Please find below the necessary files for GSTUMT00003168001 annotation :

link to GSTUMT00003168001 Artemis file
link to scaffold_162 sequence file
link to scaffold_162ESTs