Duplessis Sébastien

Seb2015

Bio: I received a BSc in Biology at Bordeaux University (1995), a MSc in Cell Biology and Physiology (1998) and a PhD in Plant and Forest Sciences (2001) at Nancy University (silver medal of the french Academy of Agriculture, 2001). I was hired in 2001 at INRA as a junior research scientist. I spent one year Post-doc in Nick Talbot’s lab at Exeter University (2003-2004) to extend my background in molecular phytopathology. Since 2005, my research in the Ecogenomics team has focused on the poplar-poplar rust pathosystem. I obtained the HDR diploma from Lorraine University (Region Lorraine Researcher Award 2012 and Académie Stanislas Zivi Award 2012) and I was appointed INRA Research Director (DR2) in 2012. I am currently head of the Ecogenomic of interactions team and I coordinate the transversal scientific project Mechanism and evolution of the poplar-poplar rust interaction within the Tree-Microbe Interactions department at INRA Nancy.

Resume: My research at INRA aims to elucidate how trees respond to pathogens and how biotroph pathogens are able to develop and feed on trees. Our model is the poplar-poplar rust pathosystem. I mainly use genomic and functional approaches to identify and characterize molecular determinants involved in disease resistance and defense response in poplar, and involved in pathogenicity and virulence in the rust fungus Melampsora larici-populina. Progress made in understanding rust fungal biotrophy will help setting new strategies to contain the rust disease.

Contact: Note my new e-mail, sebastien.duplessis<at>inra.fr / Phone, +33 383 39 40 13

Twitter: @SebbyRust

My research associates within the Tree/Microbe Interactions Department are Nicolas Rouhier (Lorraine University), Arnaud Hecker (Lorraine University), Stéphane De Mita (INRA), Fabien Halkett (INRA), Pascal Frey (INRA), Christine Delaruelle (INRA technician), Emmanuelle Morin (INRA Bioinfo engineer) and Francis Martin (INRA), Annegret Kohler (INRA), Claire Fourrey (Lorraine University) within the Ecogenomics Lab. Cécile Lorrain is a PhD student directly involved in our research project on poplar rust effectors (CJS INRA, 2014-2019, co-advisor A. Hecker).

Former PhD and postdocs

• Cécile Rinaldi/Guinet (PhD, 2004-2007, co-advisor, F Martin), now Project Manager at ANSES, Laboratoire de Santé des Végétaux, Nancy, France

• Mehdi Kaytoue (PhD, 2007-2011, co-advisor, A Napoli, INRIA, LORIA Nancy), now Lecturer at LIRIS, Lyon, France

• Stéphane Hacquard (PhD, 2008-2011; post-doc fellow, 2012-2013, co-advisor, F Martin), now Researcher in Paul Schulze-Lefert‘s group at MPI, Koln, Germany

• Benjamin Petre (PhD CJS INRA 2009-2012, co-advisor, N Rouhier, post-doc CJS INRA 2013-2014 in S Kamoun’s lab at TSL, Norwich, UK), post-doc in Sophien Kamoun‘s lab at TSL, Norwich, UK; now Research Topic specialist at Frontiers in Plant Science / Frontiers Media

• Natalya Saveleva (Post-doc ANR, 2013-2014)

• Antoine Persoons (PhD, 2012-2015, co-advisor, S De Mita, F Halkett), now post-doc in Diane Saunders team at the Earlham Institute, Norwich, UK

IMG_8330

Current activities

More coming soon…

My current work focuses on…

Populus and Melampsora genome analysis

– Rust comparative genomics (in the Melampsoraceae and Pucciniales, including the coffee rust Hemileia vastatrix and the Asian Soybean Rust Phakopsora pachyrhizi )

– Molecular basis of poplar-poplar rust R-Avr interactions

– Functional analysis of rust effectors in host cells

– Annotation and study of NB-LRR genes in Poplar and Oak genomes

Mlp-Pop

Melampsora larici-populina urediniospore germination

(© photo, Petre – Pop’art, Seb)

 

Publications

 

Google Scholar

 

 

2017

• AIME MC, McTAGGART AR, MONDO SJ, DUPLESSIS S. Phylogenetics and phylogenomics of rust fungi. Chapter. Advances in Genetics Vol. 99 (under review). Corresponding author.

• SPERSCHNEIDER J, TAYLOR J, DODDS PN, DUPLESSIS S (2017) Computational methods for predicting effectors in rust pathogens. Wheat Rust Disease- Methods and Protocols. Methods in Molecular Biology. Springer, 2017 (In Press, accepted 1st February 2017).

• GERMAIN H, JOLY DL, MIREAULT C, PLOURDE MB, LETANNEUR C, STEWART D, MORENCY M-J, PETRE B, DUPLESSIS S, SEGUIN A (2016) Infection assays in Arabidopsis reveal candidate effectors from the poplar rust fungus that promote susceptibility to bacteria and oomycete pathogens. Molecular Plant Pathology. Accepted. doi: 10.1111/mpp.12514.

2016

DUPLESSIS S, BAKKEREN G, JOLY, DL, eds. (2016) Genomics Research on Non-model Plant Pathogens: Delivering Novel Insights into Rust Fungus Biology. Lausanne: Frontiers Media. doi: 10.3389/978-2-88919-814-6. Collective Ebook. Co-editor.

• BAKKEREN G, JOLY DL, DUPLESSIS S (2016) Editorial: Genomics Research on Non-model Plant Pathogens: Delivering Novel Insights into Rust Fungus Biology. Frontiers in Plant Science 7:216. doi: 10.3389/fpls.2016.00216. Co-corresponding author.

• PETRE B, SAUNDERS DGO, SKLENAR J, LORRAIN C, KRASILEVA KV, WIN J, DUPLESSIS S, KAMOUN S (2016) In planta expression screens of candidate effector proteins from the wheat yellow rust fungus reveal processing bodies as a pathogen-targeted plant cell compartment. PLoS ONE11(2):e0149035. Pre-print @ bioRxiv.

• PETRE B, HECKER A, GERMAIN H, TSAN P, SKLENAR J, PELLETIER G, SEGUIN A, DUPLESSIS S, ROUHIER N (2016) The poplar rust-induced secreted protein (RISP) inhibits the growth of the leaf rust pathogen Melampsora larici-populina and triggers cell culture alkalinisation. Frontiers in Plant Science 7:97 doi: 10.3389/fpls.2016.00097. Co-Corresponding author.

• PLOMION C, BASTIEN C, BOGEAT-TRIBOULOT M-B, BOUFFIER L, DEJARDIN A, DUPLESSIS S, FADY B, HEUERTZ M, LE GAC A-L, LE PROVOST G, LEGUE V, LELU-WALTER M-A, LEPLE J-C, MAURY S, MOREL A, ODDOU-MURATORIO S, PILATE G, SANCHEZ L, SCOTTI I, SCOTTI-SAINTAGNE C, SEGURA V, TRONTIN J-F, VACHER C (2016) Forest tree genomics: 10 achievements from the past 10 years and future prospects. Annals of Forest Science, 73:77-103 doi: 10.1007/s13595-015-0488-3.

• PLOMION C, AURY J-M, AMSELEM J, ALAEITABAR T, BARBE V, BELSER C, BERGES H, BODENES-BREZARD C, BOUDET N, BOURY C, CANAGUIER A, COULOUX A, DA SILVA C, DUPLESSIS S, EHRENMANN F, ESTRADA-MAIREY B, FOUTEAU S, FRANCILLONNE N, GASPIN C, GUICHARD C, KLOPP C, LABADIE K, LALANNE C, LE CLAINCHE I, LEPLÉ JC, LE PROVOST G, LEROY T, LESUR-KUPIN I, MARTIN F, MERCIER J, MICHOTEY C, MURAT F, SALIN F, STEINBACH D, FAIVRE-RAMPANT P, WINCKER P, SALSE J, QUESNEVILLE H, KREMER A (2016) Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies. Molecular Ecology Resources 16:254-265.

 

2015

• LORRAIN C, HECKER A, DUPLESSIS S (2015) Effector-mining in the poplar rust fungus Melampsora larici-populina secretome. Mini-review, Frontiers in Plant Science 6:1051. Corresponding author.

• SILVA DN, DUPLESSIS S, TALHINHAS P, AZINHEIRA H, PAULO OS, BATISTA D (2015) Genomic Patterns of Positive Selection at the Origin of Rust Fungi. PLoS One 10:e0143959.

• PETRE B, LORRAIN C, SAUNDERS DG, WIN J, SKLENAR J, DUPLESSIS S, KAMOUN S (2015) Rust fungal effectors mimic host transit peptides to translocate into chloroplasts. Cellular Microbiology 18:453-465 doi: 10.1111/cmi.12530.

• PERLIN MH, AMSELEM J, FONTANILLAS E, TOH SS, CHEN Z, GOLDBERG J, DUPLESSIS S, HENRISSAT B, YOUNG S, ZENG Q, AGUILETA G, PETIT E, BADOUIN H, ANDREWS J, RAZEEQ D, GABALDÓN T, QUESNEVILLE H, GIRAUD T, HOOD ME, SCHULTZ DJ, CUOMO CA (2015) Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus. BMC Genomics 16: 461.

• PETRE B, SAUNDERS DGO, SKLENAR J, LORRAIN C, WIN J, DUPLESSIS S, KAMOUN S (2015) Candidate effector proteins of the rust pathogen Melampsora larici-populina target diverse plant cell compartments. Molecular Plant-Microbe Interactions. 28:689-700.

• LORRAIN C, MORIN E, PERSOONS A, HECKER A, DUPLESSIS S (2015) Les effecteurs de Melampsora larici-populina. Actes du séminaire 2015 de l’Ecole Doctorale RP2E, Nancy, France (ISBN 2-9518564-8-2), 8 pages.

2014

• DUPLESSIS S, BAKKEREN G, HAMELIN R (2014) Advancing knowledge on biology of rust fungi through genomics. Advances in Botanical Research 70:173-209.

• PEGEOT H, KOH CS, PETRE B, MATHIOT S, DUPLESSIS S, HECKER A, DIDIERJEAN C, ROUHIER N (2014) The poplar Phi class glutathione transferase: expression, activity and structure of GSTF1. Frontiers in Plant Science 5:712.

• PERNACI M, DE MITA S, ANDRIEUX A, PETROWSKI J, HALKETT F, DUPLESSIS S, FREY P (2014) Genome-wide patterns of segregation and linkage disequilibrium: the construction of a linkage genetic map of the poplar rust fungus Melampsora larici-populina. Frontiers in Plant Science 5:454.

• PERSOONS A, MORIN E, DELARUELLE C, PAYEN T, HALKETT F, FREY P, DE MITA S, DUPLESSIS S (2014) Patterns of genomic variation in the poplar rust fungus Melampsora larici-populina identify pathogenesis-related factors. Frontiers in Plant Science, 5:450. Corresponding author.

• PETRE B, JOLY DL, DUPLESSIS S (2014) Effector proteins of rust fungi. Mini-review, Frontiers in Plant Science 5: 416. Corresponding author.

• LOEHRER M, VOGEL A, HUETTEL B, REINHARDT R, BENES V, DUPLESSIS S, USADEL, B, SCHAFFRATH U (2014) On the current status of Phakopsora pachyrhizi genome sequencing. Perspective, Frontiers in Plant Science 5:377.

• PETRE B, HACQUARD S, DUPLESSIS S, ROUHIER N (2014) Poplar Leucine-Rich Repeat Receptor-Like Protein (LRR-RLP) genes cluster with genes coding putative endogenous ligands. Frontiers in Plant Science 5:111. Co-Corresponding author.

• TALHINAS P, AZINHEIRA HG, VIEIRA B, LOUREIRO A, TAVARES S, BATISTA D, MORIN E, PETITOT A-S, PAULO OS, POULAIN J, DA SILVA C, DUPLESSIS S, SILVA MdC, FERNANDEZ D (2014) Overview of the functional virulent genome of the coffee leaf rust pathogen Hemileia vastatrix with an emphasis on early stages of infection. Frontiers in Plant Science 5:88.

2013

• HACQUARD S, DELARUELLE C, FREY P, TISSERANT E, KOHLER A, DUPLESSIS S (2013) Transcriptome analysis of poplar rust telia reveals overwintering adaptation and tightly coordinated karyogamy and meiosis processes. Frontiers in Plant Science 4: 456. Corresponding author.

• DUPLESSIS S, SPANU PD, SCHIRAWSKI J (2013) Biotrophic fungi (powdery mildews, Rusts and Smuts). In Ecological genomics of the fungi, Plant-interacting fungi section. Martin F (ed), Wiley-Blackwell. 149-168.

• FERNANDEZ D, TALHINHAS P, DUPLESSIS S (2013) Rust fungi achievements and future challenges on genomics and host-parasite interactions. The Mycota vol. XI, Agricultural applications 2nd edition, Kempken F ed, Springer. 315-342.

• PERSOONS A, HALKETT F, DUPLESSIS S, DE MITA S (2013) La génomique des populations : évolution des méthodes de détection de la sélection. Actes du séminaire 2013 de l’Ecole Doctorale RP2E, Nancy, France (ISBN 2-9518564-8-2). 8 pages.

2012

PETRE B, MORIN E, TISSERANT E, HACQUARD S, DA SILVA C, POULAIN J, DELARUELLE C, ROUHIER N, MARTIN F, KOHLER A, DUPLESSIS S (2012) RNA-Seq of early-infected poplar leaves by the rust pathogen Melampsora larici-populina uncovers PtSultr3;5, a fungal-induced host sulfate transporter. PLoS ONE 7(8): e44408. Corresponding author.

HAMEL L-P, NICOLE M-C, DUPLESSIS S, ELLIS BE (2012) MAPK signaling in plant-interacting fungi: distinct messages from conserved messengers. The Plant Cell, 24:1327-1351.

OLSON A, AERTS A, ASIEGBU F, BELBAHRI L, BOUZID O, BROBERG A, CANBACK B, COUTINHO PM, CULLEN D, DALMAN K, DEFLORIO G, VAN DIEPEN LTA, DUNAND C, DUPLESSIS S, DURLING M, GONTHIER P, GRIMWOOD J, GUNNAR FOSSDAL C, HANSSON D, HENRISSAT B, HIETALA A, HIMMELSTRAND K, HOFFMEISTER D, HOGBERG N, JAMES TY, KARLSSON M, KOHLER A, KUES U, LEE Y-H, LIN Y-C, LIND M, LINDQUIST E, LOMBARD V, LUCAS S, LUNDEN K, MORIN E, MURAT C, PARK J, RAFFAELLO T, ROUZE P, SALAMOV A, SCHMUTZ J, SOLHEIM H, STAHLBERG J, VELEZ H, DE VRIES RP, WIEBENGA A, WOODWARD S, YAKOVLEV I, GARBELOTTO M, MARTIN F, GRIGORIEV IV, STENLID J (2012) Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen. The New Phytologist, 194:1001-1013.

coverHACQUARD S, JOLY DJ, LIN Y-C, TISSERANT E, FEAU N, DELARUELLE C, LEGUE V, KOHLER A, TANGUAY P, PETRE B, FREY P, VAN DE PEER Y, ROUZE P, MARTIN F, HAMELIN RC, DUPLESSIS S (2012)A comprehensive analysis of genes encoding small secreted proteins identifies candidate effectors in Melampsora larici-populina (poplar leaf rust). Molecular Plant-Microbe Interactions, 25:279-293. Corresponding author.
MPMI march issue cover.

FERNANDEZ D, TISSERANT E, TALHINHAS P, AZINHEIRA H, VIEIRA A, PETITOT A-S, LOUREIRO A, SILVA MdC, POULAIN J, DA SILVA C, DUPLESSIS S (2012) 454-pyrosequencing of Coffea arabica leaves infected by the rust fungus Hemileia vastatrix reveals in planta expressed pathogen-secreted proteins and plant functions expressed in a late compatible plant-rust interaction. Molecular Plant Pathology, 13:17-37. Corresponding author.

DUPLESSIS S, JOLY DJ, DODDS PN (2012) Rust effectors.Chapter 7 In Effectors in Plant-Microbes Interactions, Martin F and Kamoun S (eds), Wiley-Blackwell, pp-155-193.

VIEIRA A, TALHINHAS P, LOUREIRO A, THURICH J, DUPLESSIS S, FERNANDEZ D, SILVA MdC, PAULO OS, AZINHEIRA HG (2012) Expression profiling of genes involved in the biotrophic colonisation of Coffea arabica by Hemileia vastatrixEuropean Journal of Plant Pathology133:261-277.

• SILVA DN, VIEIRA A, TALHINHAS P, AZINHEIRA HG, SILVA MDC, FERNANDEZ D, DUPLESSIS S, PAULO OS, BATISTA D (2012) Phylogenetic analysis of Hemileia vastatrix and related taxa using a genome-scale approach. In Proccedings of the 24th Conference of the Association for Science and Information on Coffee. In press.

• DOWKIW A, JORGE V, VILLAR M, VOISIN E, GUERIN V, FAIVRE-RAMPANT P, BRESSON A, BITTON F, DUPLESSIS S, FREY P, PETRE B, GUINET C, XHAARD C, FABRE B, HALKETT F, PLOMION C, LALANNE C, BASTIEN C (2012) Breeding poplars with durable resistance to Melampsora larici-populina leaf rust: a multidisciplinary approach to understand and delay pathogen adaptation. Extended abstract in the Proceedings of the 4th International Workshop on Genetics of Host-Parasite Interactions in Forestry, Oregon, USA, General technical report PSW-GTR-240 Forest Service USDA, Eds. Pp-31-38.

2011

 HACQUARD S, PETRE B, FREY P, HECKER A, ROUHIER N, DUPLESSIS S (2011) The poplar-poplar rust interaction: insights from genomics and transcriptomics. Journal of Pathogens. (edited by B Tyler). Vol. 2011, Article ID 716041, 11 pages (doi:10.4061/2011/716041). Corresponding author.

DUPLESSIS S, HACQUARD S, DELARUELLE C, TISSERANT E, FREY P, MARTIN F, KOHLER A (2011) Melampsora larici-populina transcript profiling during germination and time-course infection of poplar leaves reveals dynamic expression patterns associated with virulence and biotrophy. Molecular Plant-Microbe Interactions24:808-818Co-1st author. Corresponding author.

L’HARIDON F, AIME S, DUPLESSIS S, ALABOUVETTE C, STEINBERG C, OLIVAIN C (2011) Isolation of differentially expressed genes during interactions between tomato cells and a protective or a non-protective strain of Fusarium oxysporum. Physiological and Molecular Plant Pathology, 76:9-19.

VIEIRA A, TALHINHAS P, LOUREIRO A, DUPLESSIS S, FERNANDEZ D, SILVA MdC, PAULO OS, AZINHEIRA HG (2011) Validation of real time quantitative PCR reference genes for in planta expression studies in Hemileia vastatrix, the causal agent of coffee leaf rust. Fungal Biology, 115:891-901.

DUPLESSIS S, CUOMO CA, LIN Y-C, AERTS A, TISSERANT E, VENEAULT-FOURREY C, JOLY DL, HACQUARD S, AMSELEM J, CANTAREL B, CHIU R, COUTINHO P, FEAU N, FIELD M, FREY P, GELHAYE E, GOLDBERG J, GRABHERR M, KODIRA C, KOHLER A, KUES U, LINDQUIST EA, LUCAS S, MAGO R, MAUCELI E, MORIN E, MURAT C, PANGILINAN JL, PARK R, PEARSON M, QUESNEVILLE H, ROUHIER N, SAKTHIKUMAR S, SCHMUTZ J, SELLES B, SHAPIRO H, TANGUAY P, TUSKAN GA, HENRISSAT B, VAN DE PEER Y, ROUZE P, ELLIS JG, DODDS PN, SCHEIN JE, ZHONG S, HAMELIN RC, GRIGORIEV IV, SZABO LJ, MARTIN F (2011) Obligate biotrophy features unraveled by the genomic analysis of rust fungi. Proceedings of the National Academy of Science USA, 108:9166-9171. Open Access. Co-1st author. Co-corresponding author.

PETRE B, MAJOR I, ROUHIER N, DUPLESSIS S (2011)Genome-wide analysis of eukaryote thaumatin-like proteins (TLPs) with an emphasis on poplar. BMC Plant Biology, 11:33. Highly accessed. Corresponding author.

HACQUARD S, VENEAULT-FOURREY C, DELARUELLE C, FREY P, MARTIN F, DUPLESSIS S (2011) Validation of Melampsora larici-populina reference genes for in planta RT-quantitative PCR expression profiling during time-course infection of poplar leaves. Physiological and Molecular Plant Pathology 75:106-112. Corresponding author.
KAYTOUE M, KUZNETSOV SO, NAPOLI A, DUPLESSIS S (2011) Mining gene expression data with pattern structures in formal concept analysis. Information Sciences 181:1989-2001.

KAYTOUE M, DUPLESSIS S, NAPOLI A (2011) Toward the discovery of itemsets with significant variations in gene expression matrices. In B Fichet et al eds, Classification and Multivariate Analysis for Complex Data Structures, Studies in Classification, Data Analysis, and Knowledge Organisation (Springer). Pp-465-473. DOI: 10.1007/978-3-642-13312-1_49

PLOMION C, VINCENT D, BEDON F, JOETS J, BONHOMME J, MORABITO D, DUPLESSIS S, NILSSON R, WINGSLE G, LARSSON C, JOLIVET Y, RENAUT J, PECHANOVA O, YUCEER C (2011) Poplar proteomics: update and future challenges. In Genetics, genomics and breeding of Poplar, Joshi CP, DiFazio SP & Kole C (eds), Science Publishers, Enfield, New Hampshire, USA. Pp-128-165.

VIEIRA A, TALHINHAS P, LOUREIRO A, DUPLESSIS S, FERNANDEZ D, SILVA MC, PAULO OS, AZINHEIRA HG (2011) Hemileia vastatrix gene expression during the infection process of coffee leaves. In Proccedings of the 23rd Conference of the Association for Science and Information on Coffee. pp-754-758.

TALHINHAS P, AZINHEIRA HG, LOUREIRO A, BATISTA D, VIEIRA B, PINA-MARTINS F, TISSERANT E, PETITOT A-S, PAULO OS, DUPLESSIS S, SILVA MC, FERNANDEZ D (2011) Overview of the functional virulent genome of the coffee leaf rust pathogen Hemileia vastatrix. In Proccedings of the 23rd Conference of the Association for Science and Information on Coffee. pp-414-422.

PETRE B, MAJOR I, FREY P, MARTIN F, ROUHIER N, DUPLESSIS S (2011) Les apports de la génomique pour l’étude des familles multigéniques: exemple des thaumatin-like proteins (TLPs) chez le peuplier. Actes du séminaire 2011 de l’Ecole Doctorale RP2E, Nancy, France (ISBN 2-9518564-8-2). 8 pages.


2010

HACQUARD S, DELARUELLE C, LEGUE V, TISSERANT E, KOHLER A, FREY P, MARTIN F, DUPLESSIS S (2010) Laser capture microdissection of uredinia formed by Melampsora larici-populina revealed a transcriptional switch between biotrophy and sporulation. Molecular Plant-Microbe Interactions23:1275-1286. Corresponding author.

MARTIN F, KOHLER A, MURAT C, BALESTRINI R, COUTINHO PM, JAILLONO, MONTANINIB, MORINE, NOEL B, PERCUDANI R, PORCEL B, RUBINIA, AMICUCCI A, AMSELEMJ, ANTHOUARDV, ARCIONIS, ARTIGUENAVEF, AURYJM, BALLARIOP, BOLCHIA, BRENNAA, BRUNA, BUEEM, CANTARELB, CHEVALIERG, COULOUXA, DA SILVAC, DENOEUDF, DUPLESSISS, GHIGNONE S, HILSELBERGERB, IOTTIM, MARÇAISB, MELLOA, MIRANDAM, PACIONIG, QUESNEVILLEH, RICCIONIC, RUOTOLOR, SPLIVALLOR, STOCCHI V, TISSERANTE, VISCOMIAR, ZAMBONELLIA, ZAMPIERIE, HENRISSATB, LEBRUNMH, PAOLOCCIF, BONFANTEP, OTTONELLO S, WINCKERP (2010) Périgord Black Truffle genome uncovers evolutionary origins and mechanisms of symbiosis. Nature 464:1033-1038.

MAJOR I, NICOLE M-C, DUPLESSIS S, SEGUIN A (2010) Photosynthetic and respiratory changes in leaves of poplar elicited by rust infection. Photosynthesis Research 104:41-48.

DUPLESSIS S and colleagues. (2010) Abstracts of oral and poster presentations given at the 4th International Rusts of Forest Trees Conference, Florence, Italy, 3-6 May 2010 (Contributor to 3 presentations and 2 posters). Phytopathologia Mediterranea 49:421-434.

JOLY DL, HACQUARD S, FEAU N, TANGUAY P, MARTIN F, HAMELIN R, DUPLESSIS S (2010) Chasing effectors in the secretome of Melampsora larici-populina. Paper 77 In Biology of plant-microbe interactions, Vol. 7, H. Antoun, T. Avis, L. Brisson, D. Prévost, and M. Trepanier, eds. International Society for Molecular Plant-Microbe Interactions, St. Paul, MN. Proceedings of the 2009 IS-MPMI congress in Québec. Corresponding author.


2009

GUERRA F, DUPLESSIS S, KOHLER A, MARTIN F, TAPIA J, LEBED P, ZAMUDIO F, GONZALEZ E (2009) Gene expression analysis of Populus deltoides roots subjected to copper stress. Environmental and Experimental Botany 67:335-344.

DUPLESSIS S, MAJOR I, MARTIN F, SEGUIN A (2009) Poplar and pathogen interactions: insights from genome-wide analyses of resistance and defense gene families and expression profiling of poplar leaves upon infection with rust. Critical Reviews in Plant Science 28:309-334. Review. Corresponding author.

KEMPPAINEN M, DUPLESSIS S, MARTIN F, PARDO AG (2009) RNA silencing in the model mycorrhizal fungus Laccaria bicolor: gene Knock-down of nitrate reductase results in inhibition of symbiosis with Populus. Environnemental Microbiology 11:1878-1896.

KAYTOUE-UBERALL M, DUPLESSIS S, KUZNETSOV SO, NAPOLI A (2009) Two FCA-based methods for mining gene expression data. In Proceedings of the 7th International Conference on Formal Concept Analysis (ICFCA 2009), Ferre S & Rudolph S (eds), published in Lecture Notes in Artificial Intelligence, Vol 5548, Springer, Berlin, Germany. Pp-251-266. DOI: 10.1007/978-3-642-01815-2_19

ROUXEL T, DUPLESSIS S, VIAUD M, AMSELEM J, LEBRUN M-H (2009) La génomique fongique: la génomique des champignons pathogènes des plantes en France. Biofutur 296:31-35.


2008

PMB-April2008coverKOHLER A, RINALDI C, DUPLESSIS S, BAUCHER M, GEELEN D, HELLSTEN U,  DUCHAUSSOY F, DIFAZIO S, BOERJAN W, MARTIN F (2008) Genome-Wide  identification of NBS resistance genes in Populus trichocarpa. Plant Molecular  Biology 66:619-636. Cover of PMB april 2008 issue.

KEMPPAINEN M, DUPLESSIS S, MARTIN F, PARDO AG (2008) T-DNA insertion, plasmid rescue and integration analysis in the model mycorrhizal fungus Laccaria bicolor. Microbial Biotechnology 1:258-269.

MARTIN F, AERTS A, AHREN D, BRUN A, DUCCHAUSSOY F, KOHLER A, LINDQUIST E, SALAMOV A, SHAPIRO HJ, WUYTS J, BLAUDEZ D,BUEE M, BROKSTEIN P, CANBACK B, COHEN D, COURTY PE, COUTINHO PM, DANCHIN EGJ, DELARUELLE C, DETTER JC, DEVEAU A, DIFAZIO S, DUPLESSIS S, FRAISSINET L, LUCIC E, FREY-KLETT P, FOURREY C, FEUSSNER I, GAY G, GIBON J, GRIMWOOD J, HOEGGER P, JAIN P, KILARU S, LABBE J, LIN YC, LE TACON F, MARMEISSE E, MELAYAH D, MONTANINI B, MURATET M, NEHLS U, NICULITA H, OUDOT LE-SECQ MP, PEREDA V, PETER M, QUESNEVILLE H, RAJASHEKAR B, REICH M, ROUHIER N, SCHMUTZ J, YIN T, CHALOT M, HENRISSAT B, KUES U, VAN DE PEER Y, PODILA G, POLLE A, PUKKILA P, RICHARDSON PM, ROUZE P, SANDERS I, STAJICH J, TUNLID A, TUSKAN G, GRIGORIEV IV (2008) Symbiosis insights from the genome of the mycorrhizal basidiomycete Laccaria bicolor. Nature 452:88-92.

KAYTOUE-UBERALL M, DUPLESSIS S, NAPOLI A (2008) Using formal concept analysis for the extraction of groups of co-expressed genes. In Proceedings of the 2nd International Conference on Modelling, Computation and Optimization in Information Systems and Management Sciences (MCO’08), Thi HAL, Bouvry P & Dinh TP (eds), published in Communications in Computer and Information Science, Springer, Berlin, Germany. Pp-439-449. DOI: 10.1007/978-3-540-87477-5_47

DUPLESSIS S, KUHN H (2008) Meeting report: Secretomic climax in plant-fungal interactions. The New Phytologist 179:907-910. Corresponding author.

KAYTOUE-UBERALL M, DUPLESSIS S, NAPOLI A (2008) Toward the discovery of itemsets with significant variations in gene expression matrices. Proceedings of the 1st joint meeting of the Société Francophone de Classification and the Classification and Data Analysis Group of SIS (SFC-CLADAG), June 11-13th 2008, Caserta, Italy. pp333-336.


2007

RINALDI C, KOHLER A, FREY P, DUCHAUSSOY F, NINGRE N, COULOUX A, WINCKER P, LE THIEC D, FLUCH S, MARTIN F, DUPLESSIS S (2007) Transcript Profiling of Poplar Leaves upon Infection with Compatible and Incompatible Strains of the Foliar Rust Melampsora larici-populina. Plant Physiology, 144:347-366. Corresponding author.

MARTIN F, KOHLER A, DUPLESSIS S (2007) Living in harmony in the wood underground: ectomycorrhizal genomics. Current Opinion in Plant Biology 10:204-210. Review.


2006

Tuskan Science coverTuskan G, DiFazio S, Bohlmann J, Grigoriev I, Hellsten U, Jansson S, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapman J, Chen G-L, Cooper D, Coutinho P, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S, Déjardin A, dePamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S, Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J, Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B, Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M, Jorgensen R, Joshi C, Kangasjärvi J, Karlsson J, Kelleher C, Kirkpatrick R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leplé J-C, Locascio P, Luo Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR, Nelson C, Nieminen K, Nilsson O, Peter G, Philippe R, Pilate G, Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouzé P, Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F, Terry A, Tsai C, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S, Yang G, Yin T, Douglas C, Sandberg G, Van de Peer Y, Rokhsar D. (2006) The genome of black cottonwood, Populus trichocarpa (Torr. & Gray ex Brayshaw). Science 313:1596-1604.

SELOSSE M-A, DUPLESSIS S (2006) Meeting report: More complexity in the mycorrhizal word. The New Phytologist172:600-604.

KOHLER A, PETER M, DUPLESSIS S, MARTIN F (2006) Microbial growth and visualisation of bacteria and fungi: Synthesis of ectomycorrhiza. In Hanbook of methods used in Rhizosphere Research, Luster J, Finlay RD (eds), Swiss Federal Research Institute WSL, Birmendorf, Suisse. pp399-400.

PETER M, KOHLER A, DUPLESSIS S, MARTIN F (2006) Identification of single species and communities: RNA extraction from ectomycorrhizas. In Hanbook of methods used in Rhizosphere Research, Luster J, Finlay RD (eds), Swiss Federal Research Institute WSL, Birmendorf, Suisse. pp457-459.

PETER M, KOHLER A, DUPLESSIS S, MARTIN F (2006) Gene expression of single species and communities: Large-scale analysis of gene expression in ectomycorrhizas. In Hanbook of methods used in Rhizosphere Research, Luster J, Finlay RD (eds), Swiss Federal Research Institute WSL, Birmendorf, Suisse. pp482-483.


2005

GABELLA S, ABBÀ S, DUPLESSIS S, MONTANINI B, MARTIN F, BONFANTE P (2005). Transcript Profiling Reveals Novel Marker Genes Involved in Fruiting Body Formation in Tuber borchii. Eukaryotic Cell 4:1599-1602.

PARDO A G, KEMPPAINEN M, VALDEMOROS D, DUPLESSIS S, MARTIN F, TAGU D (2005). T-DNA transfer from Agrobacterium tumefaciens to the ectomycorrhizal fungus Pisolithus microcarpus. Revista Argentina de Microbiología 37:69-72.

GUPTA P, DUPLESSIS S, WHITE H, KARNOSKY D F, MARTIN F, PODILA G (2005). Gene expression patterns of trembling aspen trees following long-term exposure to interacting elevated CO2 and tropospheric O3. The New Phytologist 167:129-142. co-1st author.

DUPLESSIS S, COURTY P-E, TAGU D, MARTIN F (2005). Transcript patterns associated with ectomycorrhiza development in Eucalyptus globulus and Pisolithus microcarpus.The New Phytologist 165:599-611.


2004

ROUHIER N, GELHAYE E, GUALBERTO J M, JORDY M-N, DE FAY E, HIRASAWA M, DUPLESSIS S, LEMAIRE S D, FREY P, MARTIN F, MANIERI W, KNAFF D B, JACQUOT J-P (2004). Poplar Peroxiredoxin Q. A Thioredoxin-Linked Chloroplast Antioxidant Functional in Pathogen Defense. Plant Physiology 134:1027-1038.

MARTIN F, DUPLESSIS S, KOHLER A, TAGU D (2004) Chapter 4. Exploring the transcriptome of the ectomycorrhizal symbiosis. In: Molecular Genetics and Breeding of Forest Trees (Kumar S, Fladung M, edts), Haworth’s Food Products Press, New York, pp. 81-109.

KOHLER A, PETER M, JAMBOIS A, COURTY PE, DUPLESSIS S, LAPEYRIE F, MARTIN F (2004) Exploring the transcriptome of the ectomycorrhizal symbiosis. Meeting abstract APS 2004, Phytopathology 94:S133.


2003

PETER M, COURTY P-E, KOHLER A, DELARUELLE C, MARTIN D, TAGU D, FREY-KLETT P,DUPLESSIS S, CHALOT M, PODILA G, MARTIN F (2003). Analysis of expressed sequence tags from the ectomycorrhizal basidiomycetes Laccaria bicolor and Pisolithus microcarpus. The New Phytologist 159:117-129.

HUGOT K & DUPLESSIS S (2003) Réseaux d’ADN : puces à ADN, filtres d’ADNc. In Principes des Techniques de Biologie Moléculaire, 2nde édition revue et augmentée (D. Tagu & C. Moussard, éds), INRA Editions. pp 65-75.


2002

LACOURT I, DUPLESSIS S, ABBA S, BONFANTE P, MARTIN F (2002). Isolation and characterization of differentially expressed genes in the mycelium and fruit body of Tuber borchii. Applied and Environmental Microbiology 68:4574-4582. co-1st author.

BARKER SJ, DUPLESSIS S, TAGU D (2002). The application of genetic approaches for investigations of mycorrhizal symbioses. Plant and Soil 244:85-95.

DUPLESSIS S, TAGU D, MARTIN F (2002). Living together underground : a molecular glimpse of the ectomycorrhizal symbiosis In Molecular biology of fungal development (Osiewacz, ed.). Mycology Series, Dekker & Dekker, New York, pp 297-323.

MARTIN F, DUPLESSIS S, DITENGOU F A, LAGRANGE H, VOIBLET C, LAPEYRIE F (2002). Rhizospheric signals and early molecular events in the ectomycorrhizal symbiosis InPlant signal transduction : frontiers in molecular biology(Scheel D & Wasternanck C, edts). Oxford University Press, pp 272-288.


2001

MARTIN F, DUPLESSIS S, DITENGOU F, LAGRANGE H, VOIBLET C, LAPEYRIE F (2001). Developmental cross talking in the ectomycorrhizal symbiosis : signals and communication genes. New Phytologist151:145-154.

DUPLESSIS S, SORIN C, VOIBLET C, PALIN B, MARTIN F, TAGU D (2001). Cloning and expression analysis of a new hydrophobin cDNA from the ectomycorrhizal basidiomycete Pisolithus. Current Genetics39:335-339.

VOIBLET C, DUPLESSIS S, ENCELOT N, MARTIN F (2001). Identification of symbiosis-regulated genes in Eucalyptus globulus-Pisolithus tinctorius ectomycorrhiza by differential hybridization of arrayed cDNAs. The Plant Journal 25:181-192. co-1st author.

DUPLESSIS S (2001) PhD Thesis (in french) – Caractérisation par ingénierie génomique des profils d’expression génique de Pisolithus tinctorius et d’Eucalyptus globulus au cours du développement de la symbiose ectomycorhizienne. Thèse de Doctorat, Université Henri Poincaré-NancyI. pp105.

DUPLESSIS S (1998) MSc (in french) – Caractérisation et étude de l’expression de gènes des voies de transduction chez le champignon ectomycorhizien Pisolithus tinctorius. Diplôme d’Etudes Approfondies, Université Henri Poincaré-Nancy I. pp20.

DUPLESSIS S (1997) MSc (in french) Etude des composés phénoliques de la symbiose Betula pendulaPaxillus involutus par HPLC au cours des stades précoces de mycorhization. Mémoire de Maîtrise de Biologie Cellulaire et Physiologie Végétale, Université Henri Poincaré-Nancy I. pp25.


CONFERENCES & MEETINGS

• DUPLESSIS S, PETRE B, GERMAIN H, HECKER A, FREY P, HALKETT F, DE MITA S, JOLY DL, HACQUARD S, SEGUIN A, ROUHIER N. Investigating virulence effectors in the poplar-poplar rust pathosystem. 30th New Phytologist Symposium Immunomodulation by plant-associated organisms, Fallen Leaf Lake, CA, USA, September 2012 (Invited Speaker)

• DUPLESSIS S. Genomics of the poplar-poplar rust interaction: an emerging model pathosystem in forest pathology. 1st Symposium of the Annals of Forest Science journal, Champenoux, France, March 2012 (Invited Speaker)

DUPLESSIS S. Candidate effectors of Melampsora larici-populina, the causal agent of the poplar leaf rust disease. REID network, Fungal Pathogens group meeting, Paris, France, december 2011 (speaker).

DUPLESSIS S. Candidate effectors of Melampsora larici-populina, the causal agent of the poplar leaf rust disease. Effectome network 4th meeting, Lauret, France, september 2011 (speaker).

DUPLESSIS S. Comparative genomic analysis of rust fungi. Basidiomycete meeting, satellite workshop of the 2011 JGI User Meeting, Walnut Creek, CA, USA, march 2011 (Speaker).

DUPLESSIS S, HACQUARD S, JOLY DL, LIN Y-C, AND THE MELAMPSORA GENOME CONSORTIUM. Genome-wide analysis of the secretome repertoire in the poplar rust pathogen Melampsora larici-populina. 26th Fungal Genetics Conference, Asilomar, CA, USA, march 2011 (Poster).

DUPLESSIS S. Les interactions Arbres-Champignons à l’ère de la génomique : Emergence du pathosystème modèle Peuplier/Melampsora. Journée scientifique de l’IFR110 EFABA, Nancy, France, December 2010 (Speaker).

DUPLESSIS S. Candidate rust effectors in the secretome of the obligate fungal biotroph Melampsora larici-populina. Effectome Network 3rd Meeting, Lauret, France, October 2010 (Speaker).

DUPLESSIS S. The poplar-rust interaction through the lens of genomics: an emerging model pathosystem in forest pathology. Laurentian Forestry Centre, Canadian Forest Service, Québec, Canada, May 2010 (seminar on invitation).

DUPLESSIS S. Chasing Effectors in the Genomes of Fungal Symbionts and Pathogens of Trees. 110th General Meeting of the American Society for Microbiology. Division X Lectures, San Diego, CA, USA, May 2010 (invited speaker).

Duplessis S, Lin Y-C, Tisserant E, Hilselberger B, Hacquard S, Joly D, Veneault-Fourrey C, Feau N, Tangay P, Kohler A, Lindquist E, Cantarel B, Couthinho P, Henrissat B, Frey P, Murat C, Amselem J, JGI Sequencing and Assembling Teams, Aerts A, Rouzé P, Van de Peer Y, Hamelin R, Grigoriev I, Martin F. The genome sequence of the poplar rust pathogen Melampsora larici-populina. 4th IUFRO International meeting on Rusts of Forest Trees, Florence, Italy, May 2010 (invited speaker). Abstract published in Phytopathol Mediterr 49:421-434.

Hacquard S, Delaruelle C, Tisserant E, Legué V, Kohler A, Frey P, Martin F, Duplessis S. Laser capture microdissection of uredinia formed by Melampsora larici-populina revealed a transcriptional switch between biotrophy and sporulation. 4th IUFRO International meeting on Rusts of Forest Trees, Florence, Italy, May 2010 (Poster). Abstract published in Phytopathol Mediterr 49:421-434.

 

Fernandez D, Tisserant E, Talhinhas P, Azinheira H, Petitot A-S, Duplessis S. Identification of Hemileia vastatrix in planta expressed genes through 454-pyrosequencing of rust-infected Coffea arabica leaf tissues. 4th IUFRO International meeting on Rusts of Forest Trees, Florence, Italy, May 2010 (Poster). Abstract published in Phytopathol Mediterr 49:421-434.

 

DUPLESSIS S. Chasing effectors in the genomes of fungal symbionts and pathogens of trees. European Conference on Fungal Genetics, ECFG10, Netherlands, April 2010 (invited speaker).

DUPLESSIS S. The genome sequence of the poplar leaf rust Melampsora larici-populina. Basidiomycete meeting, mini-symposium at the JGI User Meeting. Walnut Creek, CA, USA, March 2010 (Speaker).

DUPLESSIS S. The genome sequence of the poplar leaf rust Melampsora larici-populina. 8èmes rencontres de Phytopathologie-Mycologie de la Société Française de Phytopathologie, JJC2010. Aussois, January 2010 (Speaker).

DUPLESSIS S. The poplar-rust interaction through the lens of genomics: an emerging model pathosystem in forest pathology. University of Helsinki, December 2009 (seminar on invitation)

DUPLESSIS S. Sequencing the Populus community genome for a better understanding of tree-microbe interactions. university of Helsinki, December 2009 (seminar on invitation)

DUPLESSIS S. The poplar-rust interaction through the lens of genomics: an emerging model pathosystem in forest pathology. 3rd UPRA Meeting, Nancy, France, November 2009 (invited speaker)

DUPLESSIS S, HACQUARD S, JOLY D, FEAU N, LIN Y-C, TISSERANT E, FREY P, HAMELIN R, MARTIN F, JGI SEQUENCING & ASSEMBLING STAFF. Chasing effectors in the secretome of Melampsora larici-populina, the causal agent of the poplar leaf rust. 22nd New Phytologist Symposium, Versailles, France, September 2009 (invited speaker)

DUPLESSIS S. Analyse moléculaire du sécrétome de Melampsora larici-populina, agent de la rouille foliaire du peuplier, et de Laccaria bicolor, symbiote ectomycrorhizien du peuplier. 7ème colloque national de la Société Française de Phytopathologie. Lyon, France, June 2009 (invited speaker of session ‘thèmes émergents en phytopathologie et interactions plantes-microorganismes)

DUPLESSIS S. Génomique des interactions arbres-champignons biotrophes : recherche de marqueurs moléculaires des résistance qualitative et quantitative à Melampsora larici-populina chez le peuplier par des approches globales. IPMSV, INRA Antibes, France, May 2008 (seminar on invitation)

DUPLESSIS S. The genome sequence of Melampsora larici-populina, the causal agent of the poplar rust disease. Basidio3 workshop on basidiomycete whole-genome sequences, Edinburgh, UK, april 2008 (Speaker).

DUPLESSIS S, HACQUARD S, TICE H, DALIN H, LUCAS S, SHAPIRO H, PANGILINAN J, SCHMUTZ J, OUDOT-LE SECQ M-P, FREY P, RICHARDSON P, MARTIN F, Genome-wide analysis of secreted proteins encoding genes in Melampsora larici-populina, the causal agent of the poplar foliar rust disease. ECFG9, 9th European Conference on Fungal Genetics, Edinburgh, UK, april 2008 (poster)

DUPLESSIS S, RINALDI C, KOHLER A, FREY P, LALANNE C, JORGE V, DOWKIW A, GUÉRIN V, FAIVRE-RAMPANT P, BRESSON A, PAOLUCCI I, PLOMION C, BASTIEN C, MARTIN F. Recherche de marqueurs moléculaires des résistances qualitative et quantitative à Melampsora larici-populina chez le peuplier par des approches globales. Journées Jean Chevaugeon. 7ème Rencontres de Phytopathologie/Mycologie de la SFP, Aussois, France, January 2008 (invited speaker)

DUPLESSIS S. The sequencing of the Populus community genome for a better understanding of the tree-microbe interactions. Talca University, Chile, November 2007 (seminar on invitation).

DUPLESSIS S. The sequencing of the Populus community genome for a better understanding of the tree-microbe interactions. 2nd UPRA Meeting, Umea, Sweden, October 2007 (invited speaker).

DUPLESSIS S. Genomics of Tree-Microbe Interactions: genome sequencing, annotation & transcriptomics. Journées de bioinformatique du LORIA, Nancy, France, France, September 2007 (Speaker).

DUPLESSIS S Genomics of the interaction between Populus and the poplar leaf rust, Melampsora larici-populina. Uppsala University, Sweden, April 2007 (seminar on invitation).

DUPLESSIS S, LACCARIA GENOME CONSORTIUM, JOINT GENOME INSTITUTE. Annotation of signaling pathways genes families in the ectomycorrhizal basidiomycete Laccaria bicolor reveals an expansion of a G-proteins encoding genes family. Fungal Genetics Conferences, Asilomar, CA, USA, March 2007 (speaker).

DUPLESSIS S, JAIN P, GROSDEMANDE A, DUCHAUSSOY F, MURATET M, PODILA G, MARTIN F. Annotation of signalling pathways genes families in the ectomycorrhizal basidiomycete Laccaria bicolorreveals an expansion of a G-proteins encoding genes family. IXth International Fungal Biology Conference & 16th New Phytologist Symposium, Nancy, France, September 2006 (poster)

KOHLER A, PEREDA V, DUPLESSIS S, MARTIN F. Transcript patterns associated with ectomycorrhiza formation in poplar. 5th International Conference On Mycorrhiza, Granada, Spain, July 2006 (invited speaker).

DUPLESSIS S, KOHLER A, RINALDI C, FREY P, MARTIN F. Dissecting the early molecular events in poplar leaves upon interaction with rust. XL annual meeting of the Argentine Society for Biochemistry and Molecular Biology. Iguazu, Missiones, Argentina, December 2004 (Poster).

DUPLESSIS S, KOHLER A, RINALDI C, FREY P, MARTIN F. Characterization of the early response of poplar to rust infection using expression profiling. 12th New Phytologist Symposium on Functional Genomics of Environmental Adaptation in Populus. Gatlinburg TE, USA, October 2004 (invited speaker).

RINALDI C, KOHLER A, DUPLESSIS S, FREY P, MARTIN F. Isolation and expression of a host- response gene family encoding thaumatin-like proteins in incompatible poplar-rust fungus interaction. 12th New Phytologist Symposium on Functional Genomics of Environmental Adaptation in Populus. Gatlinburg TE, USA, October 2004 (Poster).

DUPLESSIS S. L’apport de la bioinformatique pour l’étude des interactions entre les arbres et les micro-organismes. 2ème journée de conférence de l’association DGIN, Université Henri Poincaré, Nancy, France, September 2004 (speaker).

DUPLESSIS S. Exploring the transcriptome of the ectomycorrhizal symbiosis. Gordon Research Conferences on Cellular and Molecular Fungal Biology. Plymouth NH, USA, June 2004 (invited speaker).

DUPLESSIS S. Transcriptome studies of tree/fungi interactions: transcriptome analysis of symbiotic and pathogenic interactions in forest trees. Uppsala University, Sweden, September 2003 (seminar on invitation).

DUPLESSIS S, KOHLER A, ROUHIER N, FREY P, JACQUOT J-P, MARTIN F. Gene expression profiling in poplar leaves upon infection with rust. IUFRO Tree Biotechnology Meeting, Umea, Sweden, June 2003 (invited speaker).

DUPLESSIS S, COURTY P-E, TAGU D, MARTIN F. Analyse du transcriptome de Pisolithus microcarpuset d’Eucalyptus globulus au cours du développement de la symbiose ectomycorhizienne. Séminaire annuel du Groupe d’Etude de l’Arbre ‘Réaction de l’arbre aux symbioses, parasites et ravageurs’, Nancy, France, May 2003 (speaker).

DUPLESSIS S. Caractérisation des profils d’expression génique de Pisolithus microcarpus et d’Eucalyptus globulus au cours du développement de la symbiose ectomycorhizienne par une approche de génomique fonctionnelle : principes et limites des techniques mises en jeu, UPRES-EA 3569, Université de Lille, France, April 2003 (seminar on invitation).

DUPLESSIS S, COURTY P-E, TAGU D, MARTIN F. Analyse du transcriptome de Pisolithus microcarpuset d’Eucalyptus globulus au cours du développement de la symbiose ectomycorhizienne. Journées du réseau de mycologie, Société Française de Microbiologie, Nancy, France, January 2003(speaker).

DUPLESSIS S, COURTY P-E, TAGU D, MARTIN F. Transcriptome profiling indicates that multiple metabolic pathways are activated during the development of the Eucalyptus/Pisolithus ectomycorrhiza. 10th New Phytologist Symposium, Functional Genomics of Plant-Microbe Interactions, Nancy, France, October 2002 (invited speaker).

DUPLESSIS S, ROUHIER N, FREY P, KOHLER A, JACQUOT J-P, MARTIN F. Analyse du transcriptome du pathosystème Populus x interamericana / Melampsora larici-populina. JJC, IVème Rencontres de Mycologie-Phytopathologie, Aussois, France, March 2002 (speaker).

DUPLESSIS S, MARTIN F. Monitoring Eucalyptus globulus and Pisolithus tinctorius gene expression during the ectomycorrhizal symbiosis development using cDNA arrays and cluster analysis. Wood, Breeding, Biotechnology and industrial expectation, Bordeaux, France, June 2001 (poster).

DUPLESSIS S. Caractérisation par ingénierie génomique des profils d’expression génique de Pisolithus tinctorius et d’Eucalyptus globulus au cours du développement de la symbiose ectomycorhizienne. Laboratoire de génétique, Pierroteon, May 2001 (seminar on invitation).

DUPLESSIS S, VOIBLET C, MARTIN F. Monitoring differential gene expression in Eucalyptus globulus-Pisolithus tinctorius ectomycorrhiza using cDNA arrays. Fifth European Conference on Fungal Genetics, Arcachon, France, April 2000 (poster).

DUPLESSIS S, VOIBLET C, MARTIN F. Caractérisation et étude de l’expression de gènes des voies de transduction du champignon ectomycorhizien Pisolithus tinctorius. JJC, IIIème Rencontres de Mycologie-Phytopathologie, Aussois, France, March 2000 (speaker).

DUPLESSIS S, VOIBLET C, TAGU D, MARTIN F. ESTs et Filtres d’ADNc : Des méthodologies permettant d’étudier le transcriptome de la symbiose ectomycorhizienne. 5ème Rencontres BMoléculaire des Ligneux, Montpellier, France, October 1999 (speaker).